# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.2491		
1gefA	123	0.4513	c.52.1.18	60465
1ob8A	135	0.5957	c.52.1.18	111627
1hh1A	143	1.496	c.52.1.18	61036
1u20A	212	7.035	d.113.1.1	119463
1xmxA	385	15.08	c.52.1.26	115568
1y88A	199	16.28	a.60.4.3,c.52.1.30	116560,116561
2inbA	140	29.23		
2pjuA	225	34.51		
1hg7A	66	35.28	b.85.1.1	28280
1ucsA	64	39.65	b.85.1.1	88466
2q5cA	196	41.01		
2je6B	250	49.37		
2arcA	164	50.99	b.82.4.1	28148
2jg6A	186	56.56		
2nn6B	249	59.81		
2a40B	260	67.68	d.151.1.1	126139
1ecfA	504	69.54	c.61.1.1,d.153.1.1	34053,41820
1dynA	125	71.55	b.55.1.1	26955
3b4tA	262	80.97		
2cx4A	164	88.11	c.47.1.10	130973
1jj2S	119	88.53	b.34.5.1	63104
2q49A	359	89.62	c.2.1.3,d.81.1.1	139831,139832