# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tkiA	321	11.35	d.144.1.7	41638
1xwsA	313	13.27	d.144.1.7	116133
1xmxA	385	17.37	c.52.1.26	115568
2bikB	313	18.38		
1jksA	294	18.85	d.144.1.7	71710
2arcA	164	19.77	b.82.4.1	28148
1u20A	212	22.77	d.113.1.1	119463
1h1wA	289	23.86	d.144.1.7	83460
1hv9A	456	28.94	b.81.1.4,c.68.1.5	28060,34518
1gefA	123	28.99	c.52.1.18	60465
2jc5A	259	31.22		
2eo0A	147	31.51		
2inbA	140	34.90		
1yhvA	297	38.46		
1o6lA	337	40.73	d.144.1.7	81092
1ob8A	135	42.61	c.52.1.18	111627
2c30A	321	45.62		
1pztA	286	46.96	c.68.1.2	95470
1uu3A	310	49.57	d.144.1.7	99999
1rdqE	350	49.74	d.144.1.7	97314
1ofzA	312	51.76	b.68.8.1	86978
1apmE	350	53.01	d.144.1.7	41628
2okfA	140	55.73		
2bfxA	284	56.26		
3c4zA	543	59.50		
2q5cA	196	61.83		
1csn	298	62.36		
1xh9A	350	64.20		
2bvaA	292	66.75		
1mq4A	272	70.57	d.144.1.7	91391
1dcsA	311	73.05	b.82.2.1	28124
1vzoA	355	73.19	d.144.1.7	108971
1y88A	199	76.53	a.60.4.3,c.52.1.30	116560,116561
2jc4A	256	80.25		
1zrzA	364	88.67