# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xmxA	385	4.497	c.52.1.26	115568
2eo0A	147	4.708		
1ob8A	135	4.823	c.52.1.18	111627
1gefA	123	6.190	c.52.1.18	60465
2jc5A	259	11.66		
1u20A	212	13.19	d.113.1.1	119463
1nukA	183	21.78	b.18.1.4	23721
1shwB	181	24.07	b.18.1.4	105563
1ofzA	312	26.01	b.68.8.1	86978
2jc4A	256	28.45		
1y88A	199	31.57	a.60.4.3,c.52.1.30	116560,116561
1kgyA	181	33.20	b.18.1.4	72449
1dcsA	311	38.13	b.82.2.1	28124
2arcA	164	40.24	b.82.4.1	28148
2bbaA	185	42.10		
1pvtA	238	44.90	c.74.1.1	95189
2inbA	140	54.75		
2okfA	140	63.23		
1akoA	268	75.45	d.151.1.1	41779
1f89A	291	75.68	d.160.1.1	64988
1hh1A	143	75.88	c.52.1.18	61036
1wc2A	181	76.87		
1f75A	249	76.91	c.101.1.1	59662
3c8xA	206	77.59		
1ojrA	274	81.26	c.74.1.1	93147
2h88A	621	84.87		
1d02A	202	85.05	c.52.1.8	33313
1kssA	571	86.27	a.138.1.3,c.3.1.4,d.168.1.1	72928,72929,72930
1bbt1	213	86.54