Best Alignments for T0495

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1gefA/T0495-1gefA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gefA/T0495-1gefA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5311e-037.75e-15 1gefA c.52.1.18
2eo0A/T0495-2eo0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2eo0A/T0495-2eo0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.7068e-026.07e-11
1y88A/T0495-1y88A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y88A/T0495-1y88A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6761e-014.95e-07 a.60.4.3
c.52.1.30
1cliA/T0495-1cliA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1cliA/T0495-1cliA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.7820e-017.76e-12 1cliA d.79.4.1
d.139.1.1
1dctA/T0495-1dctA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dctA/T0495-1dctA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0614e+002.81e-07 6mhtA c.66.1.26
2ganA/T0495-2ganA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ganA/T0495-2ganA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6048e+009.60e-10 d.108.1.1
1q7fA/T0495-1q7fA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1q7fA/T0495-1q7fA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.1233e+003.76e-03 b.68.9.1
2btuA/T0495-2btuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2btuA/T0495-2btuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.3329e+008.05e-08
1e4eA/T0495-1e4eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1e4eA/T0495-1e4eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.3776e+001.25e-05 1iow c.30.1.2
d.142.1.1
1pv9A/T0495-1pv9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pv9A/T0495-1pv9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6673e+005.87e-03 c.55.2.1
d.127.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001