# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1pv9A 348 3.44e-02 c.55.2.1,d.127.1.1 95157,95158 1xjdA 345 8.35e-02 d.144.1.7 115388 1q7fA 286 6.34e-01 b.68.9.1 96036 1augA 215 7.38e-01 1a2zA c.56.4.1 33798 1suuA 312 1.64e+00 b.68.10.1 99006 2pbxA 203 1.82e+00 1j3nA 408 2.40e+00 c.95.1.1,c.95.1.1 84074,84075 1gefA 123 2.53e+00 1gefA c.52.1.18 60465 1e1hA 287 2.59e+00 d.92.1.7 83167 3bs2A 148 2.68e+00 1qydA 313 3.39e+00 c.2.1.2 96583 2jc5A 259 3.55e+00 1yk3A 210 3.83e+00 d.108.1.1 123493 1ox0A 430 4.18e+00 c.95.1.1,c.95.1.1 87495,87496 1x12A 208 5.00e+00 1de3A 150 5.33e+00 1aqzA d.1.1.3 36240 1e8yA 966 5.39e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2vsnA 568 5.61e+00 2bwrA 401 5.80e+00 2i9uA 439 5.85e+00 2nutA 769 5.99e+00 2f57A 317 6.11e+00 1e7uA 961 6.11e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1ik6A 369 6.38e+00 c.36.1.7,c.48.1.2 66174,66175 1aqzA 149 6.87e+00 1aqzA d.1.1.3 36238 1dctA 324 7.51e+00 6mhtA c.66.1.26 34244 1y0kA 209 7.78e+00 c.52.1.31 122485 2r6hA 290 7.86e+00 1e8xA 961 8.02e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19148,23183,37631,41711 2es9A 115 8.48e+00 a.247.1.1 132318 1qg8A 255 8.64e+00 1qg8A c.68.1.1 34505 3bonA 425 8.78e+00 1fepA 724 9.53e+00 1fepA f.4.3.3 43808 1w0pA 781 1.01e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1r4yA 136 1.04e+01 d.1.1.3 97056 1k32A 1045 1.09e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2aeeA 211 1.15e+01 c.61.1.1 126620 2jerA 389 1.22e+01 1e5mA 416 1.27e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1kb0A 677 1.29e+01 a.3.1.6,b.70.1.1 68378,68379 3c8bA 432 1.33e+01 1kshA 186 1.34e+01 c.37.1.8 72914 1p5dX 463 1.35e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1kit 757 1.42e+01 1kit 2i53A 258 1.45e+01 2fp4B 395 1.47e+01 c.23.4.1,d.142.1.4 133897,133898 2j0iA 303 1.47e+01 1j6oA 268 1.50e+01 c.1.9.12 77088 1n6eA 1071 1.54e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1cjbA 231 1.55e+01 1qk3A c.61.1.1 34079 1jg8A 347 1.59e+01 1jg8A c.67.1.1 62946 2graA 277 1.59e+01 1m6sA 347 1.63e+01 c.67.1.1 78701 1e9lA 377 1.64e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 1w99A 558 1.72e+01 1cf1A 404 1.82e+01 1cf1A b.1.18.11,b.1.18.11 21907,21908 2vhlA 396 1.83e+01 2culA 232 1.85e+01 c.3.1.7 130813 2evaA 307 1.86e+01 1qamA 244 1.95e+01 2ercA c.66.1.24 34220 1eyzA 392 1.95e+01 1ez1A b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2pz0A 252 1.95e+01 1qlgA 355 2.06e+01 1qlgA b.68.3.1 27627 1fbnA 230 2.06e+01 1fbnA c.66.1.3 34181 2bvaA 292 2.07e+01 1kjqA 391 2.11e+01 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1ez1A 392 2.13e+01 1ez1A b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 2po1B 277 2.14e+01 2cz9A 350 2.32e+01 2dejA 350 2.34e+01 1xmxA 385 2.39e+01 c.52.1.26 115568 1v4vA 376 2.40e+01 c.87.1.3 100313 1wd5A 208 2.49e+01 c.61.1.1 114524 1h6lA 353 2.50e+01 b.68.3.1 60687 1vf8A 377 2.58e+01 c.1.8.5,d.26.3.1 120029,120030 1ceo 343 2.59e+01 1ceo 1ceoA 343 2.59e+01 c.1.8.3 28808 2pooA 355 2.63e+01 1qlgA b.68.3.1 27626 1gg1A 350 2.64e+01 1qr7A c.1.10.4 29187 1tqyA 424 2.64e+01 c.95.1.1,c.95.1.1 107245,107246 2c6uA 122 2.66e+01 2oodA 475 2.81e+01 2hs3A 603 2.84e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 2pb2A 420 2.88e+01 1aisB 200 2.92e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 2c30A 321 2.94e+01 3c2gA 619 2.96e+01 3d33A 108 2.97e+01 1g8sA 230 3.04e+01 c.66.1.3 90507 1ea5A 537 3.10e+01 2bce c.69.1.1 34592 2o57A 297 3.11e+01 1sfsA 240 3.13e+01 c.1.8.8 98846 1qr7A 350 3.14e+01 1qr7A c.1.10.4 29191 1eokA 290 3.18e+01 1eokA c.1.8.5 28991 1k2yX 463 3.19e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2e8yA 718 3.19e+01 1txuA 273 3.21e+01 a.222.1.1 107439 2hstA 143 3.24e+01 2izzA 322 3.28e+01 3crvA 551 3.37e+01 1musA 477 3.40e+01 c.55.3.4 79494 1p0iA 529 3.47e+01 c.69.1.1 93867 2fa8A 105 3.60e+01 c.47.1.23 133185 2ercA 244 3.66e+01 2ercA c.66.1.24 34224 1eu8A 409 3.69e+01 1eu8A c.94.1.1 59502 3bg2A 444 3.93e+01 2ofzA 138 3.95e+01 2avxA 171 3.95e+01 1muhA 481 3.98e+01 c.55.3.4 79485 1ob8A 135 3.99e+01 c.52.1.18 111627 2fepA 289 4.05e+01 1qzzA 374 4.06e+01 a.4.5.29,c.66.1.12 96719,96720 2yx0A 342 4.09e+01 1pd21 199 4.10e+01 1pd21 1j7xA 302 4.18e+01 c.14.1.2 66425 2pn8A 211 4.25e+01 1j3lA 164 4.34e+01 c.8.7.1 90813 1wy2A 351 4.42e+01 2qdyB 212 4.47e+01 2nzxA 371 4.47e+01 1n8fA 350 4.56e+01 c.1.10.4 85397 2z2nA 299 4.56e+01 2a6lA 292 4.56e+01 c.1.10.1 126285 1ahjB 212 4.56e+01 2ahjB b.34.4.4 24601 1a8rA 221 4.59e+01 1a8rA d.96.1.1 40587 1o12A 376 4.68e+01 b.92.1.5,c.1.9.10 80758,80759 2cz1B 212 4.68e+01 b.34.4.4 131034 1c14A 262 4.70e+01 1eny c.2.1.2 29927 2q8zA 342 4.72e+01 2fl4A 149 4.73e+01 d.108.1.1 133706 1a9cA 221 4.76e+01 1a8rA d.96.1.1 40602 1ordA 730 4.78e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31274,34503,41124 2a0mA 316 4.79e+01 c.42.1.1 125960 2ojpA 292 4.81e+01 1pot 325 4.85e+01 1pot 1potA 325 4.85e+01 c.94.1.1 35807 1eg7A 557 4.89e+01 1eg7A c.37.1.10 32241 1c4kA 730 4.92e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1qg6A 261 4.93e+01 1eny c.2.1.2 29919 2g17A 337 5.05e+01 c.2.1.3,d.81.1.1 134512,134513 1ofcX 304 5.06e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 2ahjB 212 5.09e+01 2ahjB b.34.4.4 24599 1iicA 422 5.21e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 2g9iA 249 5.33e+01 d.340.1.1 134806 2aj2A 208 5.41e+01 d.310.1.1 126840 1cc1S 283 5.53e+01 2frvA e.19.1.1 43313 1qsgA 265 5.56e+01 1eny c.2.1.2 29935 2phnA 254 5.62e+01 d.340.1.1 139696 2p9jA 162 5.63e+01 2hufA 393 5.68e+01 1kv9A 668 5.68e+01 a.3.1.6,b.70.1.1 73056,73057 1ogoX 574 5.75e+01 b.133.1.1,b.80.1.10 92925,92926 2gzqA 200 5.78e+01 2rkvA 451 5.78e+01 2aexA 346 5.88e+01 1hw6A 278 5.90e+01 1frb c.1.7.1 61296 1onxA 390 5.91e+01 b.92.1.7,c.1.9.13 87176,87177 1ayrA 368 5.99e+01 1cf1A b.1.18.11,b.1.18.11 21915,21916 1onwA 390 6.01e+01 b.92.1.7,c.1.9.13 87172,87173 1on3A 523 6.01e+01 c.14.1.4,c.14.1.4 87107,87108 2q4wA 524 6.02e+01 1vk3A 615 6.14e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2nu8B 388 6.34e+01 2purA 292 6.37e+01 2au7A 175 6.39e+01 2z8pA 241 6.50e+01 1dhpA 292 6.51e+01 1dhpA c.1.10.1 29097 1ybqB 390 6.59e+01 1rwiA 270 6.61e+01 b.68.9.1 97987 1gaxA 862 6.68e+01 1gaxA b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1jksA 294 6.69e+01 d.144.1.7 71710 1dx4A 586 6.71e+01 2bce c.69.1.1 34622 2f2uA 402 6.96e+01 1q1gA 276 7.01e+01 c.56.2.1 95574 1wohA 305 7.06e+01 c.42.1.1 109446 2ot3A 274 7.15e+01 a.222.1.1 139311 1j08A 226 7.26e+01 c.47.1.2,c.47.1.2 83855,83856 2hafA 211 7.34e+01 d.310.1.1 136286 2h00A 254 7.41e+01 c.66.1.54 135925 2qdlA 165 7.44e+01 2oo3A 283 7.48e+01 2hykA 245 7.48e+01 1eudB 396 7.48e+01 2scuB c.23.4.1,d.142.1.4 31150,41571 2a2aA 321 7.50e+01 1vgvA 384 7.70e+01 c.87.1.3 100608 1d3uB 201 7.74e+01 1aisB a.74.1.2,a.74.1.2 18386,18387 2exrA 524 7.74e+01 1dt9A 437 7.76e+01 1dt9A c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 1k2xB 143 7.77e+01 1qmvA 197 7.87e+01 1qq2A c.47.1.10 33066 2a6nA 292 7.91e+01 c.1.10.1 126289 2scuB 388 7.94e+01 2scuB c.23.4.1,d.142.1.4 31141,41562