Best Alignments for T0495

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1gefA/T0495-1gefA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gefA/T0495-1gefA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2737e-021.77e-15 1gefA c.52.1.18
2eo0A/T0495-2eo0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2eo0A/T0495-2eo0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.6558e-026.51e-11
1y88A/T0495-1y88A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y88A/T0495-1y88A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9745e-012.78e-10 a.60.4.3
c.52.1.30
1cliA/T0495-1cliA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1cliA/T0495-1cliA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6712e+001.42e-10 1cliA d.79.4.1
d.139.1.1
2jc5A/T0495-2jc5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2jc5A/T0495-2jc5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.3311e+004.17e-05
1sw5B/T0495-1sw5B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1sw5B/T0495-1sw5B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.0175e+001.86e-05 c.94.1.1
2inbA/T0495-2inbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2inbA/T0495-2inbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.9759e+008.86e-10
1gvfA/T0495-1gvfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gvfA/T0495-1gvfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.3865e+009.09e-12 c.1.10.2
1awiA/T0495-1awiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1awiA/T0495-1awiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.5900e+005.99e+00 1pne d.110.1.1
1gmlA/T0495-1gmlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gmlA/T0495-1gmlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0945e+012.85e-08 c.8.5.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001