# List of top-scoring protein chains for T0495.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gefA 123 2.95e-01 1gefA c.52.1.18 60465 1e1hA 287 5.85e-01 d.92.1.7 83167 2eo0A 147 6.63e-01 2g7pA 425 8.71e-01 2g7nA 425 9.00e-01 1gebA 415 1.46e+00 1phd a.104.1.1 18932 1dz4A 414 1.60e+00 1phd a.104.1.1 18903 1t85A 414 1.75e+00 a.104.1.1 106650 2ferA 411 1.80e+00 a.104.1.1 133350 1qmqA 414 1.81e+00 1phd a.104.1.1 18907 1iwkA 415 1.81e+00 a.104.1.1 71490 2a1mA 415 1.81e+00 a.104.1.1 126003 1yrcA 414 1.82e+00 a.104.1.1 123917 1iwjA 415 1.82e+00 a.104.1.1 71489 2zawA 415 1.82e+00 1rf9A 417 1.83e+00 a.104.1.1 111795 1p2yA 420 1.83e+00 a.104.1.1 93961 2fe6A 421 1.83e+00 a.104.1.1 133324 1c8jA 414 1.84e+00 1phd a.104.1.1 59085 2a1oA 415 1.89e+00 2cp4A 414 1.91e+00 a.104.1.1 18933 2a1nA 415 1.99e+00 6cp4A 414 2.00e+00 a.104.1.1 18924 1ujzA 87 2.50e+00 a.28.2.1 99475 2frzA 414 3.01e+00 a.104.1.1 134001 1y88A 199 3.36e+00 a.60.4.3,c.52.1.30 116560,116561 1x9qA 268 3.85e+00 2qbmA 421 3.99e+00 2fmnA 304 4.13e+00 1y0kA 209 4.21e+00 c.52.1.31 122485 1b5tA 275 4.54e+00 1b5tA c.1.23.1 29676 2jc5A 259 4.68e+00 1zp4A 304 4.75e+00 1zp3A 304 4.77e+00 2erhA 87 6.26e+00 2j92A 209 7.34e+00 2ggmA 172 8.33e+00 a.39.1.5 135152 2bhgA 209 9.06e+00 1awiA 138 9.59e+00 1pne d.110.1.1 40871 2pbdP 139 9.60e+00 1hh1A 143 9.81e+00 1gefA c.52.1.18 61036 2p4sA 373 1.02e+01 2amiA 96 1.12e+01 1xzwA 426 1.19e+01 b.1.12.1,d.159.1.1 116270,116271 2qbnA 421 1.21e+01 1pneA 139 1.34e+01 d.110.1.1 40866 1xtgA 424 1.60e+01 d.92.1.7 116020 1xtfA 427 1.60e+01 d.92.1.7 116018 2ishA 421 1.62e+01 3c8bA 432 1.64e+01 3bonA 425 1.66e+01 2ilpA 444 1.67e+01 d.92.1.7 137496 1ob8A 135 1.73e+01 c.52.1.18 111627 2pzfA 228 1.85e+01 1zmzA 98 1.86e+01 2bg9B 370 1.89e+01 1gv0A 310 1.89e+01 c.2.1.5,d.162.1.1 65594,65595 2obhA 143 1.98e+01 1nw1A 429 1.98e+01 d.144.1.8 86286 2gv9A 1193 1.99e+01 2jojA 77 2.05e+01 2p09A 78 2.12e+01 2pzgA 241 2.20e+01 2pzeA 229 2.22e+01 2dejA 350 2.23e+01 2qniA 219 2.35e+01 2h12A 436 2.39e+01 1xf9A 283 2.46e+01 c.37.1.12 115245 2enoA 120 2.60e+01 1q7fA 286 2.64e+01 b.68.9.1 96036 1znvA 93 3.22e+01 a.28.2.1 125410 1ceiA 94 3.30e+01 a.28.2.1 16939 2gmnA 274 3.33e+01 1unkA 87 3.38e+01 1cei a.28.2.1 16935 2p0oA 372 3.38e+01 1xmjA 290 3.39e+01 c.37.1.12 115494 1xmiA 291 3.44e+01 c.37.1.12 115489 2h7rA 414 3.82e+01 1j7xA 302 3.83e+01 c.14.1.2 66425 1r0wA 286 3.87e+01 c.37.1.12 96754 2cp0A 95 4.04e+01 b.34.10.1 130689 1gqrA 532 4.04e+01 c.69.1.1 70374 1eeaA 534 4.05e+01 2bce c.69.1.1 34609 2dfpA 534 4.05e+01 2bce c.69.1.1 34597 2cekA 535 4.06e+01 c.69.1.1 130347 1ut6A 537 4.06e+01 c.69.1.1 119698 1ea5A 537 4.06e+01 2bce c.69.1.1 34592 2bboA 291 4.06e+01 1w6rA 543 4.06e+01 c.69.1.1 114283 2es9A 115 4.08e+01 a.247.1.1 132318 1vfnA 281 4.18e+01 c.56.2.1 33773 2qplA 282 4.23e+01 1lvuA 289 4.25e+01 c.56.2.1 91146 1b8oA 284 4.25e+01 1b8oA c.56.2.1 33762 2ai2A 289 4.27e+01 c.56.2.1 126814 2c58A 537 4.27e+01 c.69.1.1 129891 1ordA 730 4.29e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31274,34503,41124 1c4kA 730 4.30e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1ao7B 100 4.31e+01 1agdB b.1.1.2 20697 1a9rA 282 4.45e+01 c.56.2.1 33767 1mofA 55 4.49e+01 h.3.2.1 46324 1a9tA 284 4.49e+01 c.56.2.1 33765 1fxuA 289 4.52e+01 1b8oA c.56.2.1 33772 3pnpA 289 4.54e+01 c.56.2.1 33763 1a9sA 289 4.54e+01 c.56.2.1 33768 1xfaA 283 4.57e+01 c.37.1.12 115249 1esoA 154 4.72e+01 b.1.8.1 22293 1gxgA 85 4.90e+01 a.28.2.1 70705 1bmrA 67 5.10e+01 g.3.7.1 44144 1e5mA 416 5.17e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 2ux8A 297 5.40e+01 1b8lA 108 5.52e+01 1a75A a.39.1.4 17199 1b9aA 108 5.59e+01 1a75A a.39.1.4 17204 1deqA 390 6.11e+01 i.9.1.1 45987 1cquA 56 6.42e+01 d.100.1.1 70073 2h0eA 121 6.43e+01 2a2aA 321 6.48e+01 1ovzA 207 6.52e+01 b.1.1.4,b.1.1.4 87473,87474 1z9xA 321 6.52e+01 1wfiA 131 6.55e+01 b.15.1.4 114583 2gqxA 405 6.59e+01 2j44A 217 6.62e+01 2bg9A 370 6.64e+01 1ad3A 452 6.64e+01 1ad3A c.82.1.1 35335 1z3eB 73 6.76e+01 a.60.3.1 124401 1n32D 208 6.98e+01 d.66.1.2 79872 2vqeD 209 7.00e+01 1b3cA 64 7.02e+01 1aho g.3.7.1 44121 1uctA 218 7.12e+01 b.1.1.4,b.1.1.4 88467,88468 2hbbA 51 7.14e+01 d.100.1.1 136310 2derA 380 7.36e+01 1fjgD 209 7.37e+01 1c05A d.66.1.2 39553 2oo4A 234 7.74e+01 2dsyA 87 7.83e+01 2yujA 190 7.89e+01 2vfaA 229 7.90e+01