# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2eo0A 147 6.50e-03 1gefA 123 8.74e-03 1gefA c.52.1.18 60465 1hh1A 143 3.97e-02 1gefA c.52.1.18 61036 1y88A 199 1.69e-01 a.60.4.3,c.52.1.30 116560,116561 1ob8A 135 1.69e-01 c.52.1.18 111627 1cliA 345 4.05e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 1of5B 184 6.55e+00 d.17.4.2 86934 1jq5A 370 7.01e+00 e.22.1.2 67084 1vimA 200 7.46e+00 c.80.1.3 100758 1y0kA 209 7.76e+00 c.52.1.31 122485 2jc5A 259 8.47e+00 1m3sA 186 8.50e+00 c.80.1.3 78573 1ty0A 211 8.60e+00 b.40.2.2,d.15.6.1 107440,107441 1f9yA 158 8.86e+00 d.58.30.1 83249 1lvwA 295 8.95e+00 c.68.1.6 84723 1e1hA 287 9.24e+00 d.92.1.7 83167 1gvfA 286 9.29e+00 c.1.10.2 70599 1snzA 344 9.71e+00 b.30.5.4 98930 1sw2A 275 1.09e+01 c.94.1.1 106064 1m1lA 236 1.12e+01 d.260.1.1 91166 1l1jA 239 1.12e+01 b.47.1.1 84516 2h2wA 312 1.16e+01 1vrpA 381 1.23e+01 a.83.1.1,d.128.1.2 120473,120474 2jesA 503 1.37e+01 2ex4A 241 1.40e+01 c.66.1.42 132516 3c8bA 432 1.45e+01 1uv7A 110 1.60e+01 d.67.4.1 100040 1t9mA 214 1.63e+01 b.45.1.1 112364 1qmvA 197 1.64e+01 1qq2A c.47.1.10 33066 1xmxA 385 1.67e+01 c.52.1.26 115568 2okfA 140 1.68e+01 2inbA 140 1.85e+01 3bonA 425 1.88e+01 1q7fA 286 1.95e+01 b.68.9.1 96036 2f5xA 312 1.96e+01 2g45A 129 2.09e+01 1ea5A 537 2.24e+01 2bce c.69.1.1 34592 2i1sA 188 2.30e+01 1cjbA 231 2.33e+01 1qk3A c.61.1.1 34079 1jeoA 180 2.37e+01 c.80.1.3 66611 2icgA 160 2.41e+01 1tf4A 605 2.46e+01 1tf4A a.102.1.2,b.2.2.2 18827,22393 1v9fA 325 2.47e+01 d.265.1.3 108448 1dosA 358 2.49e+01 1dosA c.1.10.2 29175 1sw5B 275 2.50e+01 c.94.1.1 106070 1eonA 245 2.57e+01 1rvaA c.52.1.2 33238 3bixA 574 2.67e+01 1sx5A 244 2.67e+01 c.52.1.2 99023 1j33A 335 2.71e+01 c.39.1.1 77069 1qh4A 380 2.71e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1j7nA 776 2.76e+01 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 1wx1A 335 2.77e+01 1u6rA 380 2.78e+01 a.83.1.1,d.128.1.2 119600,119601 2pzmA 330 2.99e+01 2jsoA 88 3.10e+01 2jroA 78 3.25e+01 1msk 331 3.38e+01 1msk 1mskA 331 3.38e+01 d.173.1.1 42495 1iicA 422 3.47e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 2nttA 217 3.59e+01 1eg9A 449 3.60e+01 1ndoA b.33.1.2,d.129.3.3 24443,41322 2p14A 192 3.61e+01 1j3wA 163 3.67e+01 d.110.7.1 90833 1qb5D 99 3.73e+01 b.40.2.1 88357 1qx4A 274 3.85e+01 b.43.4.2,c.25.1.1 104624,104625 2btuA 346 3.87e+01 2c5uA 375 3.89e+01 2gl6A 392 4.05e+01 1xkuA 330 4.08e+01 c.10.2.7 115425 2qdfA 335 4.11e+01 2pb2A 420 4.16e+01 1r6fA 310 4.21e+01 e.46.1.1 97149 1uctA 218 4.21e+01 b.1.1.4,b.1.1.4 88467,88468 1tiiD 99 4.29e+01 1tiiD b.40.2.1 24965 2z5bA 151 4.37e+01 1sw5A 275 4.51e+01 c.94.1.1 106069 1deuA 277 4.55e+01 1theB d.3.1.1 37085 1skoA 143 4.58e+01 d.110.7.1 105676 1hrdA 449 4.75e+01 1k89 c.2.1.7,c.58.1.1 30219,33867 1o7nA 449 4.94e+01 b.33.1.2,d.129.3.3 81162,81163 2h0eA 121 4.95e+01 2dj5A 133 4.98e+01 c.92.1.3 131536 1jmsA 381 4.99e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1c4kA 730 5.03e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1v0aA 178 5.03e+01 b.18.1.30 119815 8rucI 123 5.22e+01 1rboC d.73.1.1 39629 3bqxA 150 5.47e+01 1umkA 275 5.50e+01 b.43.4.2,c.25.1.1 113312,113313 1xdnA 277 5.68e+01 d.142.2.4 115168 1ml8A 134 5.68e+01 d.227.1.2 85013 1ohvA 472 5.74e+01 c.67.1.4 93031 3cmgA 667 5.81e+01 1we0A 187 5.83e+01 c.47.1.10 120930 1y1pA 342 5.87e+01 c.2.1.2 122550 1ka9H 200 5.91e+01 c.23.16.1 77308 3bhwA 209 6.00e+01 2q7eA 291 6.02e+01 1prtF 98 6.13e+01 1prtF b.40.2.1 25140 2v9yA 334 6.15e+01 2d1xA 66 6.15e+01 1gmlA 178 6.22e+01 c.8.5.2 70273 1vetA 124 6.27e+01 d.110.7.1 108553 2e5yA 133 6.32e+01 2jh1A 246 6.33e+01 1mkiA 330 6.37e+01 e.3.1.2 84994 3blnA 143 6.50e+01 1nv8A 284 6.57e+01 c.66.1.30 86224 2pbeA 294 6.64e+01 1p0iA 529 6.77e+01 c.69.1.1 93867 1i2cA 404 6.79e+01 c.2.1.2 83666 1iow 306 6.85e+01 1iow 1iowA 306 6.85e+01 c.30.1.2,d.142.1.1 31713,41481 3cc6A 281 6.93e+01 1wv8A 73 7.00e+01 d.304.1.1 121326 1pfkA 320 7.02e+01 3pfk c.89.1.1 35575 2bryA 497 7.07e+01 3c8xA 206 7.07e+01 1s4iA 175 7.08e+01 2pn8A 211 7.28e+01 3cox 507 7.32e+01 1b8sA 3coxA 507 7.32e+01 c.3.1.2,d.16.1.1 30332,37863 1n8jA 186 7.32e+01 c.47.1.10 85401 3bs2A 148 7.36e+01 1xtlA 175 7.58e+01 2oasA 436 7.72e+01 1qrrA 394 7.83e+01 1qrrA c.2.1.2 29824