# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2jc5A 259 3.78e-01 1gefA 123 5.73e-01 1gefA c.52.1.18 60465 1y0kA 209 1.05e+00 c.52.1.31 122485 1e1hA 287 1.29e+00 d.92.1.7 83167 2a2aA 321 1.55e+00 1q7fA 286 2.10e+00 b.68.9.1 96036 2f57A 317 2.15e+00 1pv9A 348 2.36e+00 c.55.2.1,d.127.1.1 95157,95158 3bonA 425 2.78e+00 1jksA 294 3.24e+00 d.144.1.7 71710 3c8bA 432 3.27e+00 1p4fA 293 3.62e+00 d.144.1.7 104063 1e5mA 416 3.91e+00 1dd8A c.95.1.1,c.95.1.1 58973,58974 2j0iA 303 4.68e+00 1j3nA 408 4.75e+00 c.95.1.1,c.95.1.1 84074,84075 2bvaA 292 5.11e+00 1ad3A 452 6.03e+00 1ad3A c.82.1.1 35335 2dejA 350 6.88e+00 2cz9A 350 7.25e+00 1sw5B 275 8.45e+00 c.94.1.1 106070 2f2uA 402 8.53e+00 2j44A 217 8.92e+00 1lm4A 194 1.02e+01 d.167.1.1 84626 1ob8A 135 1.10e+01 c.52.1.18 111627 1u5rA 348 1.17e+01 d.144.1.7 113050 1yx2A 365 1.23e+01 1xzwA 426 1.28e+01 b.1.12.1,d.159.1.1 116270,116271 1ox0A 430 1.29e+01 c.95.1.1,c.95.1.1 87495,87496 1p0iA 529 1.37e+01 c.69.1.1 93867 2evaA 307 1.37e+01 1umkA 275 1.39e+01 b.43.4.2,c.25.1.1 113312,113313 3c8xA 206 1.42e+01 1xjdA 345 1.43e+01 d.144.1.7 115388 2bwrA 401 1.43e+01 1xmxA 385 1.60e+01 c.52.1.26 115568 2fa8A 105 1.60e+01 c.47.1.23 133185 2c30A 321 1.64e+01 1zq7A 207 1.65e+01 d.309.1.1 125501 1cjbA 231 1.65e+01 1qk3A c.61.1.1 34079 1c4xA 285 1.67e+01 1c4xA c.69.1.10 34684 1yk3A 210 1.69e+01 d.108.1.1 123493 2jdiA 510 1.70e+01 1sw5A 275 1.76e+01 c.94.1.1 106069 1xv5A 401 1.89e+01 2bx2L 517 2.00e+01 1xdnA 277 2.11e+01 d.142.2.4 115168 2oo4A 234 2.11e+01 2q8zA 342 2.19e+01 1yhvA 297 2.24e+01 1j7xA 302 2.36e+01 c.14.1.2 66425 1h8eA 510 2.45e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 2es9A 115 2.50e+01 a.247.1.1 132318 2fp4B 395 2.59e+01 c.23.4.1,d.142.1.4 133897,133898 1qx4A 274 2.66e+01 b.43.4.2,c.25.1.1 104624,104625 3bhyA 283 2.70e+01 2p3yA 491 2.72e+01 1o6yA 299 2.75e+01 d.144.1.7 81106 1fpzA 212 2.80e+01 1fpzA c.45.1.1 59976 1vetA 124 2.81e+01 d.110.7.1 108553 3cblA 377 3.02e+01 2d4nA 152 3.38e+01 2r6hA 290 3.39e+01 2gdm 153 3.41e+01 2gdm 2gdmA 153 3.41e+01 a.1.1.2 15212 1bj7 156 3.53e+01 1bj7 1bj7A 156 3.53e+01 b.60.1.1 27113 1kkcA 221 3.56e+01 a.2.11.1,d.44.1.1 68660,68661 2q4oA 215 3.83e+01 c.129.1.1 139872 2ggoA 401 3.86e+01 1c0pA 363 3.98e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1fo8A 343 4.00e+01 1foaA c.68.1.10 59927 1b5tA 275 4.05e+01 1b5tA c.1.23.1 29676 1j6oA 268 4.06e+01 c.1.9.12 77088 2i0kA 561 4.07e+01 1qydA 313 4.11e+01 c.2.1.2 96583 2jbwA 386 4.16e+01 1k2yX 463 4.25e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1y88A 199 4.25e+01 a.60.4.3,c.52.1.30 116560,116561 1oacA 727 4.44e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1zp4A 304 4.51e+01 1zgdA 312 4.53e+01 1jj2R 84 4.58e+01 1ffkP d.12.1.1 63103 1skoA 143 4.70e+01 d.110.7.1 105676 2pavP 139 4.80e+01 1ec7A 446 5.21e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1xkuA 330 5.23e+01 c.10.2.7 115425 2pbdP 139 5.43e+01 2aj2A 208 5.49e+01 d.310.1.1 126840 2vsnA 568 5.49e+01 2ajrA 331 5.50e+01 c.72.1.1 126892 1ml8A 134 5.55e+01 d.227.1.2 85013 1zuaX 317 5.58e+01 1gmlA 178 5.58e+01 c.8.5.2 70273 1mqsA 671 5.64e+01 e.25.1.1 79414 1b8oA 284 5.67e+01 1b8oA c.56.2.1 33762 1vqoS 85 5.70e+01 d.12.1.1 120380 2exrA 524 5.73e+01 1mkhA 107 5.75e+01 b.40.4.4 79238 1yd0A 96 5.78e+01 1pzxA 289 5.82e+01 c.119.1.1 95484 2eueA 279 5.82e+01 3bkbA 377 5.91e+01 2fneA 117 5.96e+01 b.36.1.1 133813 2d5xA 141 6.00e+01 a.1.1.2 131282 1r1mA 164 6.12e+01 d.79.7.1 96820 1i7pA 274 6.15e+01 b.43.4.2,c.25.1.1 66048,66049 1gg1A 350 6.25e+01 1qr7A c.1.10.4 29187 1xjjA 644 6.30e+01 3b82A 842 6.39e+01 2qniA 219 6.48e+01 2q4wA 524 6.73e+01 3comA 314 6.75e+01 1mq4A 272 6.77e+01 d.144.1.7 91391 1txuA 273 6.83e+01 a.222.1.1 107439 1v9fA 325 6.86e+01 d.265.1.3 108448 1p2fA 220 6.91e+01 a.4.6.1,c.23.1.1 87720,87721 2a6lA 292 6.93e+01 c.1.10.1 126285 1sf8A 126 7.09e+01 d.271.1.1 105472 1r0wA 286 7.09e+01 c.37.1.12 96754 2i1nA 102 7.13e+01 1ndh 272 7.24e+01 1ndh 1rwiA 270 7.26e+01 b.68.9.1 97987 2jerA 389 7.28e+01 1xmiA 291 7.29e+01 c.37.1.12 115489 2ba1A 179 7.38e+01 2ot3A 274 7.40e+01 a.222.1.1 139311 2aznA 219 7.47e+01 c.71.1.2 127608 1qwrA 319 7.49e+01 b.82.1.3 96491 1n25A 368 7.55e+01 c.37.1.20 85264 1pneA 139 7.59e+01 d.110.1.1 40866 2c0rA 362 7.60e+01 c.67.1.4 129604 1qmvA 197 7.62e+01 1qq2A c.47.1.10 33066 1pne 140 7.67e+01 1pne 1n0uA 842 7.77e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1i19A 561 7.99e+01 1i19A d.58.32.3,d.145.1.1 61522,61523