Best Alignments for T0495

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2eo0A	5.8058e-02	2eo0A/T0495-2eo0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1gefA	8.1344e-02	1gefA/T0495-1gefA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.52.1.18
1ob8A	9.8147e-02	1ob8A/T0495-1ob8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.52.1.18
1hh1A	2.2936e-01	1hh1A/T0495-1hh1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.52.1.18
1y88A	4.3545e-01	1y88A/T0495-1y88A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.4.3 c.52.1.30
2inbA	6.7513e+00	2inbA/T0495-2inbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1y0pA	2.1877e+01	1y0pA/T0495-1y0pA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.138.1.3 c.3.1.4 d.168.1.1
2okfA	2.2242e+01	2okfA/T0495-2okfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1emvB	3.1672e+01	1emvB/T0495-1emvB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
7ceiB	3.2000e+01	7ceiB/T0495-7ceiB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1fr2B	3.2032e+01	1fr2B/T0495-1fr2B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2es9A	4.1104e+01	2es9A/T0495-2es9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2vlqB	5.3880e+01	2vlqB/T0495-2vlqB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zc1A	5.4256e+01	1zc1A/T0495-1zc1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2hjsA	5.7227e+01	2hjsA/T0495-2hjsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vqoB	5.7861e+01	1vqoB/T0495-1vqoB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.43.3.2
2gykB	6.0084e+01	2gykB/T0495-2gykB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ng7A	6.0492e+01	1ng7A/T0495-1ng7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zx0A	6.0955e+01	1zx0A/T0495-1zx0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1akaA	6.1193e+01	1akaA/T0495-1akaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001