# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.04521		
1ob8A	135	0.09236	c.52.1.18	111627
1gefA	123	0.09344	c.52.1.18	60465
1hh1A	143	0.1635	c.52.1.18	61036
1y88A	199	1.126	a.60.4.3,c.52.1.30	116560,116561
1y0pA	571	6.497	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
2inbA	140	9.643		
1i24A	404	11.95	c.2.1.2	83663
2gq0A	303	23.02		
1i2cA	404	30.88	c.2.1.2	83666
1qrrA	394	35.10	c.2.1.2	29824
1i82A	189	36.45	b.1.9.2	61937
2okfA	140	39.75		
2yueA	168	39.89		
2j9oA	298	42.78		
2bs2A	660	50.88	a.7.3.1,c.3.1.4,d.168.1.1	129030,129031,129032
2qc1B	212	52.12		
2bw4A	340	53.39	b.6.1.3,b.6.1.3	129320,129321
1vqoB	338	53.81	b.43.3.2	120363
1oroA	213	56.53	c.61.1.1	34093
2je6B	250	62.74		
1r6lA	239	69.27	d.14.1.4,d.101.1.1	97153,97154
2i87A	364	69.94		
3c2gA	619	70.69		
2j7vA	298	72.40		
1r6dA	337	73.23	c.2.1.2	97148
1x75A	132	73.55		
1aunA	208	76.86	b.25.1.1	23900
1jj2B	337	78.22	b.43.3.2	63086
1ffkB	338	79.13	b.43.3.2	25719
1h7eA	245	81.41	c.68.1.13	60717
1t35A	191	81.56	c.129.1.1	99108
1z45A	699	81.91	b.30.5.4,c.2.1.2	124427,124428
1ohpA	125	82.12	d.17.4.3	118702
1rvgA	305	89.84	c.1.10.2	97920
2bllA	345	89.96	c.2.1.2	128733