# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.03992		
1gefA	123	0.08317	c.52.1.18	60465
1ob8A	135	0.1302	c.52.1.18	111627
1hh1A	143	0.1398	c.52.1.18	61036
1y88A	199	0.7550	a.60.4.3,c.52.1.30	116560,116561
1y0pA	571	3.315	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
2inbA	140	6.666		
1i24A	404	11.03	c.2.1.2	83663
1i82A	189	23.16	b.1.9.2	61937
2okfA	140	25.60		
2h88A	621	27.42		
2bs2A	660	29.95	a.7.3.1,c.3.1.4,d.168.1.1	129030,129031,129032
1i2cA	404	29.98	c.2.1.2	83666
2gq0A	303	31.21		
2j9oA	298	31.34		
1qrrA	394	34.63	c.2.1.2	29824
1ffkB	338	42.28	b.43.3.2	25719
2bs3A	656	44.92	a.7.3.1,c.3.1.4,d.168.1.1	129042,129043,129044
2j7vA	298	49.68		
2yueA	168	53.20		
1vqoB	338	54.65	b.43.3.2	120363
2bw4A	340	57.63	b.6.1.3,b.6.1.3	129320,129321
1oroA	213	59.69	c.61.1.1	34093
1d2pA	373	60.37	b.3.5.1,b.3.5.1,b.3.5.1,b.3.5.1	22629,22630,22631,22632
1sgoA	139	61.70	d.82.3.1	98857
1ohpA	125	62.44	d.17.4.3	118702
2bllA	345	63.20	c.2.1.2	128733
1uf5A	303	64.81	d.160.1.2	107808
2qc1B	212	67.20		
2ey4C	82	68.99	b.43.3.5	132582
1x75A	132	71.93		
1qubA	319	72.70	g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1	44863,44864,44865,44866,44867
1wfwA	74	82.56	b.34.2.1	114595