# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ob8A	135	0.01173	c.52.1.18	111627
2eo0A	147	0.01422		
1hh1A	143	0.04021	c.52.1.18	61036
1gefA	123	0.04408	c.52.1.18	60465
1y88A	199	0.1342	a.60.4.3,c.52.1.30	116560,116561
2inbA	140	1.953		
1y0pA	571	3.941	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
1i24A	404	5.371	c.2.1.2	83663
2bs2A	660	9.549	a.7.3.1,c.3.1.4,d.168.1.1	129030,129031,129032
2okfA	140	11.91		
2bs3A	656	12.08	a.7.3.1,c.3.1.4,d.168.1.1	129042,129043,129044
1i2cA	404	15.72	c.2.1.2	83666
1fpqA	372	18.41	a.4.5.29,c.66.1.12	59947,59948
1qrrA	394	19.16	c.2.1.2	29824
1oroA	213	25.42	c.61.1.1	34093
2nn6E	305	28.19		
1ohpA	125	28.38	d.17.4.3	118702
1dzfA	215	28.90	c.52.3.1,d.78.1.1	33344,39753
2bw4A	340	33.76	b.6.1.3,b.6.1.3	129320,129321
1vqoB	338	34.54	b.43.3.2	120363
1h7eA	245	39.15	c.68.1.13	60717
1oxkB	134	39.38	c.23.1.1	93691
1lml	478	40.34		
2h88A	621	41.54		
1x0oA	119	41.88		
2j9oA	298	45.33		
1uf5A	303	45.72	d.160.1.2	107808
2p25A	126	46.74		
2pjuA	225	50.93		
1wfwA	74	51.06	b.34.2.1	114595
1cquA	56	53.30	d.100.1.1	70073
2fp4B	395	55.08	c.23.4.1,d.142.1.4	133897,133898
1vetA	124	55.11	d.110.7.1	108553
2a15A	139	56.66	d.17.4.3	125973
2j7vA	298	58.93		
1xmxA	385	60.09	c.52.1.26	115568
1a62	130	60.11		
1jb7A	495	61.43	b.40.4.3,b.40.4.3,b.40.4.3	62836,62837,62838
1qxoA	388	62.38	d.258.1.1	96539
1xebA	150	63.32	d.108.1.1	115219
1i82A	189	64.63	b.1.9.2	61937
1a8vA	121	64.67	a.140.3.1,b.40.4.5	64712,64713
1ffkB	338	66.02	b.43.3.2	25719
1d2pA	373	70.58	b.3.5.1,b.3.5.1,b.3.5.1,b.3.5.1	22629,22630,22631,22632
1um0A	365	70.65	d.258.1.1	107942
2ps1A	226	71.04		
1otcA	495	71.17	b.40.4.3,b.40.4.3,b.40.4.3	25307,25308,25309
1j31A	262	74.19	d.160.1.2	90808
1t35A	191	74.43	c.129.1.1	99108
1c9uA	454	75.11	b.68.2.1	27623
1sgoA	139	76.70	d.82.3.1	98857
2vvtA	290	77.71		
1f5tA	121	81.20	a.4.5.24,a.76.1.1	16203,18409
2jo6A	113	82.39		
1skoA	143	82.84	d.110.7.1	105676
2q4oA	215	83.33	c.129.1.1	139872
1c6vX	81	85.74	b.34.7.1	24641