# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.01266		
1ob8A	135	0.02382	c.52.1.18	111627
1gefA	123	0.02928	c.52.1.18	60465
1hh1A	143	0.06533	c.52.1.18	61036
1y88A	199	0.6149	a.60.4.3,c.52.1.30	116560,116561
1y0pA	571	2.190	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
2inbA	140	5.550		
1i24A	404	21.51	c.2.1.2	83663
2okfA	140	24.40		
2yueA	168	25.65		
2j9oA	298	43.36		
1oroA	213	43.86	c.61.1.1	34093
2gq0A	303	47.46		
1i82A	189	52.02	b.1.9.2	61937
1i2cA	404	53.01	c.2.1.2	83666
1ofzA	312	54.48	b.68.8.1	86978
2j7vA	298	57.06		
1rvgA	305	57.51	c.1.10.2	97920
1aunA	208	57.68	b.25.1.1	23900
1r6lA	239	64.51	d.14.1.4,d.101.1.1	97153,97154
2bs2A	660	65.10	a.7.3.1,c.3.1.4,d.168.1.1	129030,129031,129032
2fp4B	395	65.64	c.23.4.1,d.142.1.4	133897,133898
2qc1B	212	65.83		
1w1oA	534	66.15	d.58.32.4,d.145.1.1	109071,109072
2f3nA	76	68.13	a.60.1.2	132885
2je6B	250	69.26		
2cuyA	305	70.50		
3c2gA	619	73.68		
1dzfA	215	75.04	c.52.3.1,d.78.1.1	33344,39753
1xmxA	385	76.33	c.52.1.26	115568
1z3qA	200	76.36		
1h7eA	245	78.12	c.68.1.13	60717
2h1yA	321	78.17		
1qrrA	394	78.69	c.2.1.2	29824
1ohpA	125	81.05	d.17.4.3	118702
1b6rA	355	86.85	b.84.2.1,c.30.1.1,d.142.1.2	28241,31648,41493
2bs3A	656	88.03	a.7.3.1,c.3.1.4,d.168.1.1	129042,129043,129044
1vqoB	338	88.92	b.43.3.2	120363