# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.01698		
1ob8A	135	0.03716	c.52.1.18	111627
1gefA	123	0.04460	c.52.1.18	60465
1hh1A	143	0.07482	c.52.1.18	61036
1y88A	199	1.100	a.60.4.3,c.52.1.30	116560,116561
1y0pA	571	3.265	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
2inbA	140	5.964		
2okfA	140	24.13		
1i24A	404	25.98	c.2.1.2	83663
2gq0A	303	26.22		
1aunA	208	36.69	b.25.1.1	23900
2yueA	168	47.30		
2j9oA	298	47.32		
1r6lA	239	54.61	d.14.1.4,d.101.1.1	97153,97154
1rvgA	305	57.81	c.1.10.2	97920
1xmxA	385	58.24	c.52.1.26	115568
1i82A	189	62.06	b.1.9.2	61937
2je6B	250	64.18		
1i2cA	404	65.46	c.2.1.2	83666
1vqoB	338	66.80	b.43.3.2	120363
2i87A	364	67.82		
1jj2B	337	67.86	b.43.3.2	63086
1ofzA	312	68.46	b.68.8.1	86978
2qc1B	212	71.42		
1oroA	213	72.44	c.61.1.1	34093
2v8qA	157	72.88		
2j7vA	298	73.34		
1x75A	132	76.34		
2bs2A	660	78.35	a.7.3.1,c.3.1.4,d.168.1.1	129030,129031,129032
1ohpA	125	85.69	d.17.4.3	118702
1w1oA	534	88.57	d.58.32.4,d.145.1.1	109071,109072
2bw4A	340	88.81	b.6.1.3,b.6.1.3	129320,129321
1ffkB	338	88.96	b.43.3.2	25719
1z3qA	200	88.96		
2cuyA	305	89.74		
2ey4C	82	89.96	b.43.3.5	132582