# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.02705		
1ob8A	135	0.06678	c.52.1.18	111627
1gefA	123	0.1022	c.52.1.18	60465
1hh1A	143	0.1185	c.52.1.18	61036
1y88A	199	1.063	a.60.4.3,c.52.1.30	116560,116561
1y0pA	571	4.759	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
2inbA	140	7.971		
2gq0A	303	23.15		
2okfA	140	29.32		
1i24A	404	29.60	c.2.1.2	83663
1aunA	208	41.35	b.25.1.1	23900
2yueA	168	46.52		
1rvgA	305	56.30	c.1.10.2	97920
2j9oA	298	59.91		
1r6lA	239	60.53	d.14.1.4,d.101.1.1	97153,97154
2qc1B	212	62.41		
1w1oA	534	62.75	d.58.32.4,d.145.1.1	109071,109072
1jj2B	337	62.80	b.43.3.2	63086
1z3qA	200	64.02		
1qubA	319	70.63	g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1	44863,44864,44865,44866,44867
1i82A	189	72.22	b.1.9.2	61937
2je6B	250	74.13		
2ey4C	82	77.00	b.43.3.5	132582
2v8qA	157	77.31		
1i2cA	404	77.62	c.2.1.2	83666
2cuyA	305	79.65		
1vqoB	338	84.33	b.43.3.2	120363