# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.006628		
1gefA	123	0.01930	c.52.1.18	60465
1ob8A	135	0.08059	c.52.1.18	111627
1hh1A	143	0.09859	c.52.1.18	61036
1y88A	199	0.5546	a.60.4.3,c.52.1.30	116560,116561
2inbA	140	1.130		
2okfA	140	4.157		
3dczA	207	7.101		
1y0pA	571	11.95	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
2bs2A	660	16.93	a.7.3.1,c.3.1.4,d.168.1.1	129030,129031,129032
1oroA	213	18.79	c.61.1.1	34093
2h88A	621	20.57		
2plcA	274	22.73	c.1.18.2	29614
2bs3A	656	23.82	a.7.3.1,c.3.1.4,d.168.1.1	129042,129043,129044
1w23A	360	26.51	c.67.1.4	114088
1i82A	189	26.81	b.1.9.2	61937
1idk	359	28.14		
2fp4B	395	28.29	c.23.4.1,d.142.1.4	133897,133898
2je6A	277	29.48		
2qc1B	212	29.57		
1onwA	390	29.78	b.92.1.7,c.1.9.13	87172,87173
2yueA	168	34.70		
2nn6E	305	35.30		
2i62A	265	38.16		
1x75A	132	38.65		
1zoyA	622	38.85		
1r6lA	239	39.03	d.14.1.4,d.101.1.1	97153,97154
2i87A	364	39.31		
2jo6A	113	39.53		
1ydiA	263	40.31		
1ybqB	390	50.15		
1vqoB	338	50.56	b.43.3.2	120363
1cz4A	185	51.45	b.52.2.3,d.31.1.1	26934,38468
1ofzA	312	55.42	b.68.8.1	86978
2je6B	250	65.56		
1din	236	65.83		
2f3nA	76	66.57	a.60.1.2	132885
2aexA	346	69.49		
1xmxA	385	71.45	c.52.1.26	115568
2vhlA	396	71.60		
1mjfA	281	73.20	c.66.1.17	79198
1onxA	390	74.07	b.92.1.7,c.1.9.13	87176,87177
1t35A	191	77.02	c.129.1.1	99108
3cneA	175	81.11		
2iayA	114	83.52		
1g8sA	230	86.03	c.66.1.3	90507
1dqcA	74	86.36	g.31.1.1	44964
2hstA	143	86.57