# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gefA 123 0.004821 c.52.1.18 60465 2eo0A 147 0.008198 1ob8A 135 0.08201 c.52.1.18 111627 1hh1A 143 0.3297 c.52.1.18 61036 1y88A 199 0.6982 a.60.4.3,c.52.1.30 116560,116561 1jilA 420 0.9489 c.26.1.1 66745 1idkA 359 1.778 b.80.1.2 28025 1q16A 1247 1.939 b.52.2.2,c.81.1.1 95546,95547 2uwiA 142 4.442 2e5vA 472 4.594 2gq0A 303 5.536 1jftA 340 5.893 a.35.1.5,c.93.1.1 66652,66653 1vjfA 180 6.988 d.116.1.1 100809 1idk 359 8.469 1z3qA 200 10.92 2b78A 385 11.43 b.122.1.9,c.66.1.51 128025,128026 2rerA 173 11.71 1y0pA 571 13.62 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1jeyA 609 14.63 b.131.1.1,c.62.1.3 90370,90371 2heyR 146 14.69 g.24.1.1,g.24.1.1,g.24.1.1 136367,136368,136369 1olzA 663 14.86 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 2dg1A 333 14.99 b.68.6.1 131493 2inbA 140 16.08 2je6B 250 17.50 1pl8A 356 17.73 b.35.1.2,c.2.1.1 94878,94879 1ju2A 536 18.27 c.3.1.2,d.16.1.1 77169,77170 2mprA 421 18.95 f.4.3.2 43788 1air 353 20.01 1sc6A 404 20.18 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1i2cA 404 20.54 c.2.1.2 83666 2im9A 333 20.86 d.3.1.13 137508 1orrA 347 21.07 c.2.1.2 93460 1ii2A 524 21.72 c.91.1.1,c.109.1.1 66146,66147 1pedA 351 21.79 b.35.1.2,c.2.1.1 24753,29769 1a8dA 452 21.83 b.29.1.6,b.42.4.2 24262,25607 3pcgM 238 22.25 b.3.6.1 22742 1e4eA 343 22.43 c.30.1.2,d.142.1.1 59221,59222 3pghA 587 22.43 a.93.1.2,g.3.11.1 18726,44269 2cfuA 658 24.28 1qrrA 394 24.92 c.2.1.2 29824 1sr9A 644 24.97 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1g43A 160 25.67 b.2.2.2 22392 1qhbA 596 31.58 a.111.1.2 19055 1mf7A 194 31.60 c.62.1.1 84937 1v7pC 200 32.01 c.62.1.1 108408 1szqA 483 34.18 e.44.1.1 99045 1ndh 272 34.22 2ts1 419 34.38 2je6A 277 36.59 2qcvA 332 37.71 1g0dA 695 37.93 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 1xvaA 292 38.77 c.66.1.5 34183 2ze0A 555 39.62 2a40B 260 42.05 d.151.1.1 126139 1xx1A 285 42.42 2e9qA 459 43.68 2ozpA 345 45.69 1qj8A 148 46.82 f.4.1.1 43744 1rpnA 335 47.11 c.2.1.2 97708 1brmA 367 48.01 c.2.1.3,d.81.1.1 30030,39945 2okfA 140 48.04 1wdaA 670 48.09 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 2nutB 753 48.31 1dtyA 429 49.17 c.67.1.4 34495 1z7bA 358 49.41 c.2.1.2 124599 2j6iA 364 49.61 2o6fA 189 50.71 1b7lA 130 51.03 d.2.1.2 36515 1auvA 311 52.49 c.30.1.5,d.142.1.3 31723,41558 2po1B 277 52.94 1f1oA 431 53.21 a.127.1.1 19433 1b6sA 355 55.37 b.84.2.1,c.30.1.1,d.142.1.2 28242,31649,41494 1zyeA 220 56.17 c.47.1.10 125817 1sqsA 242 58.04 c.23.5.5 98968 1oc2A 348 60.53 c.2.1.2 92765 1qq1A 559 62.76 b.80.1.6 28041 1y791 680 65.20 1b7nA 130 65.45 d.2.1.2 36468 4bcl 366 66.16 1zmdA 474 67.50 2hi4A 495 67.92 1xl7A 612 68.90 c.43.1.3,c.43.1.3 115438,115439 2de0X 526 69.10 1bb3A 130 69.34 d.2.1.2 36544 1fl7B 111 70.64 g.17.1.4 59872 4bclA 366 71.07 b.75.1.1 27968 1zkdA 387 71.10 c.66.1.52 125184 1zy9A 564 71.10 b.30.5.11,c.1.8.13 125813,125814 1b5uA 130 71.21 d.2.1.2 36453 1pvvA 315 72.69 c.78.1.1,c.78.1.1 95190,95191 1ohpA 125 72.92 d.17.4.3 118702 1b7qA 130 73.43 d.2.1.2 36549 1yw5A 177 74.00 2a6hA 315 74.04 d.74.3.1,d.181.1.1 126260,126261 1lz1 130 76.04 2a2nA 176 76.06 b.62.1.1 126041 1t2aA 375 76.49 c.2.1.2 99078 1r6lA 239 76.72 d.14.1.4,d.101.1.1 97153,97154 1b8jA 449 79.24 c.76.1.1 34992 1ek8A 185 80.46 d.67.3.1 59444 2bllA 345 80.50 c.2.1.2 128733 1z41A 338 80.66 c.1.4.1 124421 1ezvD 245 81.04 a.3.1.3,f.23.11.1 59546,59547 2i6uA 307 81.16 1b7rA 130 81.53 d.2.1.2 36436 1otcA 495 82.04 b.40.4.3,b.40.4.3,b.40.4.3 25307,25308,25309 1tml 286 82.07 2vovA 336 83.03 2aamA 309 83.49 c.1.8.15 126489 1w0pA 781 83.76 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2vroA 532 84.19 1nkgA 508 85.15 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1hc7A 477 85.77 c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 2r5oA 188 86.65 2z2nA 299 87.05 2b4gA 317 87.81 c.1.4.1 127829 1konA 249 88.20 e.39.1.1 72823 2d80A 318 88.31 1or0B 528 89.17