# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.04457		
1ob8A	135	0.06149	c.52.1.18	111627
1gefA	123	0.09390	c.52.1.18	60465
1hh1A	143	0.2403	c.52.1.18	61036
1y88A	199	2.924	a.60.4.3,c.52.1.30	116560,116561
2inbA	140	8.241		
1y0pA	571	11.16	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
1i24A	404	16.96	c.2.1.2	83663
1aunA	208	26.50	b.25.1.1	23900
1z3qA	200	29.82		
2gq0A	303	29.86		
2j9oA	298	34.12		
2yueA	168	35.85		
2okfA	140	37.34		
1qubA	319	39.68	g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1	44863,44864,44865,44866,44867
1i82A	189	40.92	b.1.9.2	61937
2j7vA	298	50.45		
2ey4C	82	51.73	b.43.3.5	132582
1i2cA	404	52.01	c.2.1.2	83666
1sgoA	139	58.18	d.82.3.1	98857
2v8qA	157	59.97		
1jilA	420	65.98	c.26.1.1	66745
2i87A	364	66.39		
1qrrA	394	68.56	c.2.1.2	29824
2q4oA	215	69.78	c.129.1.1	139872
2qc1B	212	83.51		
2bw4A	340	89.91	b.6.1.3,b.6.1.3	129320,129321