# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.04743		
1ob8A	135	0.06388	c.52.1.18	111627
1gefA	123	0.09316	c.52.1.18	60465
1hh1A	143	0.1851	c.52.1.18	61036
1y88A	199	1.731	a.60.4.3,c.52.1.30	116560,116561
2inbA	140	7.267		
1y0pA	571	9.333	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
1i24A	404	21.24	c.2.1.2	83663
2okfA	140	27.75		
2gq0A	303	36.94		
1aunA	208	37.20	b.25.1.1	23900
1oroA	213	43.57	c.61.1.1	34093
1vqoB	338	49.24	b.43.3.2	120363
2q4oA	215	52.39	c.129.1.1	139872
1ffkB	338	56.18	b.43.3.2	25719
2j9oA	298	60.13		
1c6vX	81	60.18	b.34.7.1	24641
1z3qA	200	61.05		
1i2cA	404	66.79	c.2.1.2	83666
1vetA	124	72.50	d.110.7.1	108553
2qc1B	212	72.71		
1i82A	189	73.52	b.1.9.2	61937
1jb7A	495	75.71	b.40.4.3,b.40.4.3,b.40.4.3	62836,62837,62838
2fp4B	395	76.41	c.23.4.1,d.142.1.4	133897,133898
1fpqA	372	78.67	a.4.5.29,c.66.1.12	59947,59948
1rtfB	252	81.06		
1qubA	319	81.41	g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1	44863,44864,44865,44866,44867
2yueA	168	82.55		
1uf5A	303	82.58	d.160.1.2	107808
1qrrA	394	86.23	c.2.1.2	29824
2j7vA	298	87.23		
1skoA	143	87.49	d.110.7.1	105676
1x75A	132	87.84