# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.02719		
1ob8A	135	0.04064	c.52.1.18	111627
1gefA	123	0.05490	c.52.1.18	60465
1hh1A	143	0.1924	c.52.1.18	61036
1y88A	199	1.385	a.60.4.3,c.52.1.30	116560,116561
2inbA	140	4.933		
1y0pA	571	14.43	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
1i24A	404	25.39	c.2.1.2	83663
2okfA	140	27.33		
2gq0A	303	40.36		
1ofzA	312	51.08	b.68.8.1	86978
1d2pA	373	58.65	b.3.5.1,b.3.5.1,b.3.5.1,b.3.5.1	22629,22630,22631,22632
1uf5A	303	60.71	d.160.1.2	107808
1z3qA	200	63.07		
1i82A	189	65.69	b.1.9.2	61937
1h7eA	245	66.05	c.68.1.13	60717
1rtfB	252	66.08		
1ohpA	125	67.28	d.17.4.3	118702
1vqoB	338	67.79	b.43.3.2	120363
2q4oA	215	69.61	c.129.1.1	139872
2yueA	168	72.81		
1oroA	213	74.36	c.61.1.1	34093
2qc1B	212	75.57		
1aunA	208	76.15	b.25.1.1	23900
1qubA	319	76.34	g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1	44863,44864,44865,44866,44867
2cwrA	103	77.62		
1i2cA	404	79.70	c.2.1.2	83666
1c6vX	81	81.36	b.34.7.1	24641
3c2gA	619	82.06		
2ey4C	82	83.73	b.43.3.5	132582
1jj2B	337	87.29	b.43.3.2	63086