# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.6443		
1ob8A	135	1.666	c.52.1.18	111627
1gefA	123	1.720	c.52.1.18	60465
1hh1A	143	2.967	c.52.1.18	61036
3dczA	207	4.170		
1y88A	199	4.461	a.60.4.3,c.52.1.30	116560,116561
2h88A	621	5.921		
2bs2A	660	12.39	a.7.3.1,c.3.1.4,d.168.1.1	129030,129031,129032
1y0pA	571	16.11	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
2bs3A	656	16.56	a.7.3.1,c.3.1.4,d.168.1.1	129042,129043,129044
1ofzA	312	24.25	b.68.8.1	86978
1ermA	263	28.07	e.3.1.1	42690
3cryA	188	28.90		
2inbA	140	31.94		
2qc1B	212	35.07		
1zoyA	622	36.71		
1i82A	189	37.26	b.1.9.2	61937
3c8xA	206	48.31		
1r6lA	239	54.12	d.14.1.4,d.101.1.1	97153,97154
2okfA	140	64.22		
5gcnA	166	64.62	d.108.1.1	40807
2b78A	385	64.86	b.122.1.9,c.66.1.51	128025,128026
2a8sA	212	65.94	d.113.1.1	126416
1r44A	202	69.53	d.65.1.4	104787
1vetA	124	69.83	d.110.7.1	108553
1e4eA	343	71.26	c.30.1.2,d.142.1.1	59221,59222
1vqoB	338	72.12	b.43.3.2	120363
2nn6E	305	75.77		
2bbaA	185	79.49		
1dc1A	323	80.23	c.52.1.11	33321
1b35A	260	85.01	b.121.4.1	23333
1vknA	351	86.75	c.2.1.3,d.81.1.1	108676,108677
2v74B	346	87.59		
1xmxA	385	88.29	c.52.1.26	115568