# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1gefA	123	4.060	c.52.1.18	60465
3cxjA	165	5.236		
2rb9A	334	9.866		
2vhhA	405	11.55		
2cb4A	291	14.60		
2z1uA	343	21.51		
2inbA	140	27.69		
1mkmA	249	29.37	a.4.5.33,d.110.2.2	79242,79243
1yspA	181	30.11		
1dxrH	258	30.49	b.41.1.1,f.23.10.1	25456,43433
2oh1A	179	35.69		
1j7iA	264	36.40	d.144.1.6	62694
2v0uA	146	36.72		
2c2xA	281	38.52		
1uf5A	303	39.09	d.160.1.2	107808
2bpqA	373	44.36		
2rjzA	147	45.42		
2r76A	152	45.78		
1ob8A	135	46.20	c.52.1.18	111627
2h88A	621	47.37		
1q7bA	244	55.59	c.2.1.2	96026
1zoyA	622	56.95		
1erzA	303	57.28	d.160.1.2	59498
1xs5A	241	57.30	c.94.1.1	115912
1p99A	295	58.48	c.94.1.1	94384
2dyuA	334	59.04		
1tib	269	59.32		
1y88A	199	60.24	a.60.4.3,c.52.1.30	116560,116561
1y0pA	571	60.74	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
1l3lA	234	64.31	a.4.6.2,d.110.5.1	73541,73542
1y0hA	105	65.30	d.58.4.11	116303
1g0oA	283	66.25	c.2.1.2	60181
1vm7A	311	67.81	c.72.1.1	108884
2i5nH	258	68.71	b.41.1.1,f.23.10.1	137064,137065
1eysH	259	71.38	b.41.1.1,f.23.10.1	25484,43517
2pgcA	207	72.43		
2r00A	336	73.21		
1gvfA	286	73.77	c.1.10.2	70599
1bssA	244	76.32	c.52.1.2	33256
3cggA	195	77.82		
1yvoA	172	78.22	d.108.1.1	124106
1ybvA	283	79.40	c.2.1.2	29948
2v8qA	157	79.40		
1rvgA	305	81.55	c.1.10.2	97920
1geeA	261	83.60	c.2.1.2	90509
1iukA	140	84.26	c.2.1.8	83712
2qhnA	323	85.23		
2bs3A	656	86.05	a.7.3.1,c.3.1.4,d.168.1.1	129042,129043,129044
1vgyA	393	86.23	c.56.5.4,d.58.19.1	100620,100621
1whzA	70	86.73	d.50.3.2	114656
2nu8B	388	88.55		
1edoA	244	88.76	c.2.1.2	29896