# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.1215		
1y88A	199	0.7460	a.60.4.3,c.52.1.30	116560,116561
1hh1A	143	2.890	c.52.1.18	61036
1gefA	123	3.466	c.52.1.18	60465
1ob8A	135	5.038	c.52.1.18	111627
2inbA	140	16.54		
1bdfA	235	33.80	d.74.3.1,d.181.1.1	39727,42602
1r6lA	239	45.63	d.14.1.4,d.101.1.1	97153,97154
1ojqA	212	54.21	d.166.1.1	93146
2pjuA	225	57.42		
1vc4A	254	58.57	c.1.2.4	100557
1hg7A	66	62.66	b.85.1.1	28280
1fxoA	293	65.30	c.68.1.6	34524
1c0pA	363	66.94	c.4.1.2,d.16.1.3	30647,37934
3b4tA	262	73.97		
2jc4A	256	79.12		
1avqA	228	79.37	c.52.1.13	33326
1y56B	382	79.50		
2a22A	215	81.21	d.159.1.7	126025
3d64A	494	85.33		
2rk0A	136	85.75		
2yxlA	450	88.26