# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.2007		
1y88A	199	0.8935	a.60.4.3,c.52.1.30	116560,116561
1hh1A	143	4.217	c.52.1.18	61036
1ob8A	135	4.862	c.52.1.18	111627
1gefA	123	5.077	c.52.1.18	60465
2inbA	140	21.11		
1bdfA	235	30.55	d.74.3.1,d.181.1.1	39727,42602
1ojqA	212	36.51	d.166.1.1	93146
2pjuA	225	49.98		
1y1oA	203	54.46	c.52.1.28	116345
2nv0A	196	61.28	c.23.16.1	138625
1xmxA	385	61.35	c.52.1.26	115568
1fxoA	293	61.64	c.68.1.6	34524
1r45A	204	64.03	d.166.1.1	111683
1d02A	202	67.52	c.52.1.8	33313
1cxqA	162	71.81	c.55.3.2	33621
1hg7A	66	80.92	b.85.1.1	28280
1avqA	228	83.98	c.52.1.13	33326
2yxlA	450	84.50