# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.06382		
1y88A	199	0.2005	a.60.4.3,c.52.1.30	116560,116561
1hh1A	143	1.671	c.52.1.18	61036
1ob8A	135	2.273	c.52.1.18	111627
1gefA	123	3.030	c.52.1.18	60465
2inbA	140	6.139		
1ojqA	212	9.710	d.166.1.1	93146
2pjuA	225	11.68		
1xmxA	385	12.81	c.52.1.26	115568
2rk0A	136	16.19		
1r45A	204	21.13	d.166.1.1	111683
2q5cA	196	22.16		
1oroA	213	24.06	c.61.1.1	34093
2okfA	140	28.53		
1c0pA	363	37.72	c.4.1.2,d.16.1.3	30647,37934
1ez4A	318	38.24	c.2.1.5,d.162.1.1	64917,64918
1vc4A	254	41.29	c.1.2.4	100557
1hg7A	66	43.35	b.85.1.1	28280
1y1oA	203	45.11	c.52.1.28	116345
1tvmA	113	45.52		
1rm6B	324	47.00	d.87.2.1,d.145.1.3	111874,111875
2ghsA	326	48.49	b.68.6.1	135209
2psbA	320	54.32		
1ucsA	64	56.73	b.85.1.1	88466
1fxoA	293	61.53	c.68.1.6	34524
1dosA	358	64.40	c.1.10.2	29175
2rb9A	334	68.39		
3c0dA	119	69.56		
2p4pA	86	69.58		
2drhA	361	70.90		
1wdjA	187	71.90	c.52.1.27	114536
1t0fA	276	79.11	a.4.5.27,c.52.1.16	112195,112196
2oqrA	230	80.31		
2olnA	397	81.38		
1ji1A	637	82.73	b.1.18.2,b.71.1.1,c.1.8.1	71666,71667,71668
1ofzA	312	83.10	b.68.8.1	86978
2p3hA	101	84.15		
1tiqA	180	88.28	d.108.1.1	107010