# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.05248		
1y88A	199	0.1047	a.60.4.3,c.52.1.30	116560,116561
1ob8A	135	2.070	c.52.1.18	111627
1hh1A	143	2.625	c.52.1.18	61036
1gefA	123	2.962	c.52.1.18	60465
2inbA	140	3.647		
1xmxA	385	4.575	c.52.1.26	115568
2okfA	140	6.874		
2pjuA	225	13.91		
2jc5A	259	14.32		
1ofzA	312	18.37	b.68.8.1	86978
1dcsA	311	18.60	b.82.2.1	28124
1avqA	228	25.49	c.52.1.13	33326
1dcs	311	26.87		
2o55A	258	30.32		
2fokA	579	31.48	a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12	16131,16132,16133,33323
2q5cA	196	31.83		
1ydyA	356	34.37	c.1.18.3	123006
2nv0A	196	35.70	c.23.16.1	138625
2jc4A	256	36.80		
1v10A	521	43.86	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
1hfuA	503	45.73	b.6.1.3,b.6.1.3,b.6.1.3	65827,65828,65829
1qnrA	344	50.84	c.1.8.3	28834
1bdfA	235	55.11	d.74.3.1,d.181.1.1	39727,42602
2otnA	308	57.26		
1wwzA	159	57.41	d.108.1.1	121380
2h5gA	463	60.22		
1vc4A	254	66.02	c.1.2.4	100557
1o20A	427	68.89	c.82.1.1	86556
1vknA	351	73.38	c.2.1.3,d.81.1.1	108676,108677
1f8yA	157	89.53	c.23.14.1	31395