# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.2726		
1y88A	199	0.9387	a.60.4.3,c.52.1.30	116560,116561
1ob8A	135	4.464	c.52.1.18	111627
1hh1A	143	4.859	c.52.1.18	61036
1gefA	123	5.138	c.52.1.18	60465
2inbA	140	19.21		
2rk0A	136	28.78		
1ojqA	212	39.70	d.166.1.1	93146
1wwzA	159	46.23	d.108.1.1	121380
1xmxA	385	49.13	c.52.1.26	115568
1fxoA	293	50.73	c.68.1.6	34524
1hg7A	66	54.78	b.85.1.1	28280
1r6lA	239	55.26	d.14.1.4,d.101.1.1	97153,97154
2pjuA	225	58.61		
1r45A	204	59.32	d.166.1.1	111683
1bdfA	235	65.70	d.74.3.1,d.181.1.1	39727,42602
1ucsA	64	67.26	b.85.1.1	88466
2okfA	140	67.59		
1dosA	358	69.11	c.1.10.2	29175
2o55A	258	72.17		
1y56B	382	79.81		
3b4tA	262	82.39		
1vknA	351	85.38	c.2.1.3,d.81.1.1	108676,108677
1pjxA	314	85.43	b.68.6.1	104167
1cxqA	162	88.03	c.55.3.2	33621
1j31A	262	88.40	d.160.1.2	90808