# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gefA 123 0.08575 c.52.1.18 60465 2eo0A 147 0.1093 1y88A 199 0.3321 a.60.4.3,c.52.1.30 116560,116561 1bdfA 235 0.8306 d.74.3.1,d.181.1.1 39727,42602 1r89A 437 1.603 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1jofA 365 3.405 b.69.10.1 71775 2rk0A 136 3.464 2olnA 397 4.396 1ob8A 135 4.648 c.52.1.18 111627 1yvkA 163 5.795 d.108.1.1 124101 3c25A 383 7.755 1bgpA 309 8.019 a.93.1.1 18690 1c0pA 363 9.919 c.4.1.2,d.16.1.3 30647,37934 2akaB 299 10.27 c.37.1.8 126914 2qdrA 303 11.51 3bvrA 383 12.25 1n62C 288 13.78 d.87.2.1,d.145.1.3 80094,80095 1vffA 423 14.62 c.1.8.4 120033 2hj0A 519 15.68 1jdwA 423 15.83 d.126.1.2 41129 1si6X 282 16.10 d.151.1.2 118968 1vg0A 650 16.70 c.3.1.3,d.16.1.6 108596,108597 2inbA 140 16.83 1y56B 382 17.38 2gtqA 867 17.64 2vbaA 406 19.35 1qh4A 380 19.77 a.83.1.1,d.128.1.2 18462,41197 1j31A 262 19.87 d.160.1.2 90808 1w8oA 601 22.37 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2r3sA 335 25.12 2r1fA 270 25.35 1fxjA 331 26.25 b.81.1.4,c.68.1.5 28062,34520 2d0oA 610 28.60 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 2vktA 289 28.66 1hh1A 143 29.64 c.52.1.18 61036 2qwxA 231 29.73 1r6lA 239 30.47 d.14.1.4,d.101.1.1 97153,97154 3silA 379 30.54 b.68.1.1 27542 2je6B 250 30.62 1x1nA 524 34.52 c.1.8.1 121593 1r0vA 305 35.51 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 2c92A 160 35.55 2je6A 277 36.32 2e3zA 465 38.15 1pvvA 315 38.47 c.78.1.1,c.78.1.1 95190,95191 1fxoA 293 38.93 c.68.1.6 34524 2c0hA 353 39.52 c.1.8.3 129594 2rgmA 481 40.52 2e9lA 469 40.80 2cx4A 164 41.26 c.47.1.10 130973 1ihgA 370 41.73 a.118.8.1,b.62.1.1 62380,62381 2rghA 571 43.41 1nnfA 309 46.48 c.94.1.1 85903 2v14A 134 46.66 2p02A 396 46.79 2a40B 260 47.12 d.151.1.1 126139 1ep3B 262 48.34 b.43.4.2,c.25.1.3 25664,31554 2hpvA 208 49.60 1wkbA 810 50.09 1jftA 340 51.69 a.35.1.5,c.93.1.1 66652,66653 1poiB 260 52.32 c.124.1.3 34155 2hr7A 486 52.33 2ghsA 326 53.24 b.68.6.1 135209 2h5gA 463 54.96 1n9pA 207 54.97 b.1.18.16 80343 2h0rA 216 55.62 2e52A 300 55.83 1hg7A 66 56.50 b.85.1.1 28280 2a22A 215 57.79 d.159.1.7 126025 2e63A 170 58.63 1wwzA 159 59.88 d.108.1.1 121380 2p26A 280 60.06 1yi9A 309 60.25 b.121.1.2,b.121.1.2 123276,123277 1kdvA 370 62.08 c.41.1.2 68486 3c8mA 331 63.55 2o55A 258 64.07 1ucsA 64 64.53 b.85.1.1 88466 1blxA 326 64.64 d.144.1.7 41596 1uouA 474 65.26 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1xc1A 309 66.29 c.94.1.1 109543 1jdw 423 66.65 2pjuA 225 68.16 3d64A 494 69.09 2okfA 140 69.67 2h7wA 131 72.24 b.1.26.1 136225 1z7bA 358 73.49 c.2.1.2 124599 1gwuA 309 74.06 a.93.1.1 83351 3c96A 415 76.22 1dzfA 215 76.61 c.52.3.1,d.78.1.1 33344,39753 1xvwA 160 77.07 c.47.1.10 122387 2dq6A 870 77.77 1s3cA 141 78.69 2zctA 249 80.82 1zv9A 172 81.36 b.2.2.2 125700 1vjjA 692 84.37 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1vyrA 364 84.39 c.1.4.1 108906 1wcgA 464 84.43 c.1.8.4 120888 1pjxA 314 84.44 b.68.6.1 104167 2fokA 579 85.54 a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1pgs 314 85.86 1vcvA 226 86.64 c.1.10.1 119988 3b9tA 484 87.28 1g43A 160 87.51 b.2.2.2 22392 1d3vA 323 88.03 c.42.1.1 32559 1ur1A 378 88.39 c.1.8.3 99804 1v9fA 325 88.67 d.265.1.3 108448 2nnrA 110 89.26 1vpmA 169 89.31 d.38.1.1 113967