# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.2894		
1y88A	199	1.356	a.60.4.3,c.52.1.30	116560,116561
1gefA	123	7.534	c.52.1.18	60465
1hh1A	143	11.33	c.52.1.18	61036
1ob8A	135	14.01	c.52.1.18	111627
2rk0A	136	17.31		
2inbA	140	23.47		
1bdfA	235	36.30	d.74.3.1,d.181.1.1	39727,42602
1xmxA	385	47.09	c.52.1.26	115568
1wwzA	159	47.70	d.108.1.1	121380
1ojqA	212	48.45	d.166.1.1	93146
2q5cA	196	54.61		
1hg7A	66	61.51	b.85.1.1	28280
2pjuA	225	62.17		
3b4tA	262	75.89		
1zpdA	568	78.52	c.31.1.3,c.36.1.5,c.36.1.9	31741,31785,31786
1ji1A	637	78.69	b.1.18.2,b.71.1.1,c.1.8.1	71666,71667,71668
2d7vA	162	79.01		
1y56B	382	80.03		
1ucsA	64	84.08	b.85.1.1	88466