# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.2386		
1y88A	199	1.071	a.60.4.3,c.52.1.30	116560,116561
1hh1A	143	5.291	c.52.1.18	61036
1gefA	123	7.388	c.52.1.18	60465
1ob8A	135	10.75	c.52.1.18	111627
2inbA	140	19.80		
1xmxA	385	21.71	c.52.1.26	115568
2rk0A	136	25.02		
1hg7A	66	40.52	b.85.1.1	28280
2pjuA	225	43.18		
1ojqA	212	43.34	d.166.1.1	93146
2q5cA	196	50.00		
1ucsA	64	56.59	b.85.1.1	88466
1wwzA	159	64.77	d.108.1.1	121380
2d7vA	162	67.66		
1zpdA	568	70.85	c.31.1.3,c.36.1.5,c.36.1.9	31741,31785,31786
1r45A	204	89.59	d.166.1.1	111683