# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.1913		
1y88A	199	1.236	a.60.4.3,c.52.1.30	116560,116561
1gefA	123	5.154	c.52.1.18	60465
1hh1A	143	7.571	c.52.1.18	61036
1ob8A	135	10.72	c.52.1.18	111627
2rk0A	136	19.66		
2inbA	140	20.27		
1xmxA	385	25.18	c.52.1.26	115568
2pjuA	225	35.40		
1ojqA	212	53.54	d.166.1.1	93146
1hg7A	66	53.63	b.85.1.1	28280
1ucsA	64	64.57	b.85.1.1	88466
1bdfA	235	65.94	d.74.3.1,d.181.1.1	39727,42602
1vknA	351	69.11	c.2.1.3,d.81.1.1	108676,108677
1r45A	204	70.33	d.166.1.1	111683
2yxlA	450	85.96