# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.6424		
1y88A	199	0.7439	a.60.4.3,c.52.1.30	116560,116561
1xmxA	385	1.021	c.52.1.26	115568
2jc5A	259	5.852		
2inbA	140	9.945		
2okfA	140	14.29		
1ofzA	312	14.94	b.68.8.1	86978
2nv0A	196	17.11	c.23.16.1	138625
2jc4A	256	22.24		
2o55A	258	23.88		
2bbaA	185	28.60		
1shwB	181	28.67	b.18.1.4	105563
2piaA	321	28.91	b.43.4.2,c.25.1.2,d.15.4.2	25663,31553,37704
1d02A	202	29.95	c.52.1.8	33313
1ob8A	135	31.14	c.52.1.18	111627
1bdfA	235	34.61	d.74.3.1,d.181.1.1	39727,42602
1dxjA	242	37.99	d.2.1.1	36244
3b4tA	262	42.05		
1hh1A	143	44.77	c.52.1.18	61036
1dc1A	323	52.21	c.52.1.11	33321
1r6lA	239	52.60	d.14.1.4,d.101.1.1	97153,97154
1yd6A	99	58.19		
2fokA	579	62.48	a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12	16131,16132,16133,33323
1vpmA	169	62.80	d.38.1.1	113967
2hstA	143	64.86		
1vc4A	254	65.04	c.1.2.4	100557
2v9kA	530	70.02		
2baa	243	70.78		
1fyeA	229	78.48	c.23.16.4	31477
1dcsA	311	88.44	b.82.2.1	28124