# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rb9A 334 4.527 1f89A 291 4.884 d.160.1.1 64988 1vm7A 311 6.048 c.72.1.1 108884 1y88A 199 6.997 a.60.4.3,c.52.1.30 116560,116561 2cb4A 291 7.468 2inbA 140 8.694 1vkmA 297 10.73 c.138.1.1 108670 1bx4A 345 12.03 c.72.1.1 34935 2ddmA 283 12.04 2e52A 300 14.87 3cu3A 172 15.05 1k0iA 394 16.50 c.3.1.2,d.16.1.2 67942,67943 2r4qA 106 16.94 2r48A 106 18.51 3cxjA 165 22.12 1vyrA 364 25.08 c.1.4.1 108906 2okfA 140 25.29 2bs2A 660 26.08 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 2fv7A 331 26.10 c.72.1.1 134197 1i4nA 251 27.64 c.1.2.4 71114 1t0fA 276 27.77 a.4.5.27,c.52.1.16 112195,112196 2bs3A 656 29.49 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1j24A 143 30.09 c.52.1.20 84008 1xmpA 170 31.53 c.23.8.1 115521 1rkd 309 32.17 1v8aA 265 32.45 c.72.1.2 100494 3cpgA 282 32.94 1u8vA 490 33.94 a.29.3.1,e.6.1.1 113196,113197 1meoA 209 33.96 c.65.1.1 79035 1ub0A 258 35.23 c.72.1.2 88394 1rkdA 309 36.07 c.72.1.1 34928 2ot9A 180 37.79 2nwrA 267 37.98 2vhhA 405 38.19 1nekA 588 38.47 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1xuuA 349 40.16 b.85.1.1,c.1.10.6 116067,116068 1a4iA 301 41.43 c.2.1.7,c.58.1.2 30278,33926 1gvfA 286 41.84 c.1.10.2 70599 2uxyA 341 43.28 1p2hA 571 43.44 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2fliA 220 46.84 c.1.2.2 133714 1qczA 169 47.87 c.23.8.1 31276 2ggoA 401 48.03 2f02A 323 48.36 c.72.1.1 132649 2jg1A 330 48.41 2abqA 306 50.68 c.72.1.1 126528 1ob8A 135 51.39 c.52.1.18 111627 1pe1A 267 52.49 c.1.10.4 94591 2ywxA 157 53.98 1vi2A 300 55.10 c.2.1.7,c.58.1.5 100726,100727 1xwyA 264 55.92 c.1.9.12 122411 2g3wA 182 57.42 2bpqA 373 62.51 2h88A 621 62.67 3ce9A 354 63.31 1to3A 304 68.98 c.1.10.1 107161 3d0cA 314 69.69 2dztA 248 72.03 2d29A 387 72.48 a.29.3.1,e.6.1.1 131157,131158 1rg9A 383 72.74 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1j31A 262 73.91 d.160.1.2 90808 2ab0A 205 75.33 c.23.16.2 126501 2absA 383 75.77 c.72.1.1 126534 2c81A 418 77.81 1edzA 320 79.17 c.2.1.7,c.58.1.2 30287,33935 1vi9A 299 80.57 c.72.1.5 100750 1xi3A 215 80.76 c.1.3.1 109601 2rhsA 294 82.33 2eo0A 147 83.68 1uf5A 303 84.54 d.160.1.2 107808 1fjhA 257 85.26 c.2.1.2 29870 1v95A 130 85.60 c.51.1.1 108435 2audA 257 85.85 2z1uA 343 86.36 3cu2A 237 87.47 3c18A 290 88.14 2d13A 227 88.53 c.26.2.1 131121 1fecA 490 88.80 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1rkiA 102 89.50 d.308.1.2 118776