Best Alignments for T0495

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1gefA	2.0310e-01	1gefA/T0495-1gefA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.52.1.18
2eo0A	2.1728e-01	2eo0A/T0495-2eo0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ob8A	2.2528e-01	1ob8A/T0495-1ob8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.52.1.18
1hh1A	1.1388e+00	1hh1A/T0495-1hh1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.52.1.18
1y88A	8.3474e+00	1y88A/T0495-1y88A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.4.3 c.52.1.30
1u20A	1.5144e+01	1u20A/T0495-1u20A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.113.1.1
1xmxA	2.9920e+01	1xmxA/T0495-1xmxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.52.1.26
2inbA	3.5092e+01	2inbA/T0495-2inbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ucsA	4.1897e+01	1ucsA/T0495-1ucsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.85.1.1
2inpE	4.2297e+01	2inpE/T0495-2inpE-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1hg7A	4.7116e+01	1hg7A/T0495-1hg7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.85.1.1
1fr2B	4.9380e+01	1fr2B/T0495-1fr2B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1emvB	4.9978e+01	1emvB/T0495-1emvB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2i00A	5.5415e+01	2i00A/T0495-2i00A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2arcA	5.6217e+01	2arcA/T0495-2arcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.82.4.1
1yc9A	6.0301e+01	1yc9A/T0495-1yc9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gykB	6.0545e+01	2gykB/T0495-2gykB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2je6B	6.1423e+01	2je6B/T0495-2je6B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1o7kA	6.3684e+01	1o7kA/T0495-1o7kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ri7A	6.3994e+01	2ri7A/T0495-2ri7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001