# List of top-scoring protein chains for T0495.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e1hA	287	16.58	d.92.1.7	83167
2g7pA	425	22.87		
1ujzA	87	23.27	a.28.2.1	99475
2g7nA	425	23.65		
1gebA	415	32.29	a.104.1.1	18932
1dz4A	414	34.01	a.104.1.1	18903
1t85A	414	34.92	a.104.1.1	106650
1gefA	123	35.20	c.52.1.18	60465
2fmnA	304	35.32		
1qmqA	414	36.32	a.104.1.1	18907
2a1mA	415	36.35	a.104.1.1	126003
2ferA	411	36.37	a.104.1.1	133350
1iwkA	415	36.38	a.104.1.1	71490
1iwjA	415	36.59	a.104.1.1	71489
2zawA	415	36.66		
1yrcA	414	36.67	a.104.1.1	123917
1rf9A	417	36.72	a.104.1.1	111795
2fe6A	421	36.74	a.104.1.1	133324
1p2yA	420	36.74	a.104.1.1	93961
1b5tA	275	36.89	c.1.23.1	29676
1zp4A	304	36.98		
1c8jA	414	37.09	a.104.1.1	59085
1zp3A	304	37.16		
2a1oA	415	37.80		
2cp4A	414	37.92	a.104.1.1	18933
2a1nA	415	38.42		
6cp4A	414	38.53	a.104.1.1	18924
2erhA	87	38.60		
2eo0A	147	41.41		
2frzA	414	49.71	a.104.1.1	134001
2qbmA	421	57.66		
1x9qA	268	69.49		
1y88A	199	77.11	a.60.4.3,c.52.1.30	116560,116561
2jc5A	259	79.18