# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1gefA	123	0.1487	c.52.1.18	60465
2eo0A	147	0.1737		
1ob8A	135	0.3915	c.52.1.18	111627
1hh1A	143	1.349	c.52.1.18	61036
1u20A	212	3.096	d.113.1.1	119463
2je6B	250	20.46		
1xmxA	385	22.80	c.52.1.26	115568
2inbA	140	24.16		
1y88A	199	27.61	a.60.4.3,c.52.1.30	116560,116561
2arcA	164	28.86	b.82.4.1	28148
3b4tA	262	31.47		
1r6lA	239	34.85	d.14.1.4,d.101.1.1	97153,97154
1dcsA	311	44.12	b.82.2.1	28124
1pztA	286	45.64	c.68.1.2	95470
1hg7A	66	45.95	b.85.1.1	28280
2nn6B	249	47.97		
1ucsA	64	49.72	b.85.1.1	88466
2jc5A	259	50.55		
1ojrA	274	52.14	c.74.1.1	93147
1ofzA	312	56.53	b.68.8.1	86978
2po1B	277	65.07		
1shwB	181	65.89	b.18.1.4	105563
2fbdA	122	67.15		
2exuA	200	73.78