# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1gefA	123	0.3581	c.52.1.18	60465
2eo0A	147	0.3868		
1ob8A	135	0.9118	c.52.1.18	111627
1hh1A	143	2.894	c.52.1.18	61036
1u20A	212	10.22	d.113.1.1	119463
1y88A	199	21.23	a.60.4.3,c.52.1.30	116560,116561
1ojrA	274	23.35	c.74.1.1	93147
1xmxA	385	27.26	c.52.1.26	115568
2je6B	250	33.60		
2inbA	140	39.24		
2nn6B	249	39.35		
2pjuA	225	47.41		
2arcA	164	48.04	b.82.4.1	28148
3b4tA	262	54.76		
1dcsA	311	55.37	b.82.2.1	28124
2a40B	260	66.37	d.151.1.1	126139
1ofzA	312	71.85	b.68.8.1	86978
1hg7A	66	73.13	b.85.1.1	28280
1ucsA	64	74.40	b.85.1.1	88466
1pztA	286	76.30	c.68.1.2	95470
2po1B	277	80.27		
1vrpA	381	83.14	a.83.1.1,d.128.1.2	120473,120474
1r6lA	239	83.34	d.14.1.4,d.101.1.1	97153,97154
2je6A	277	88.99