# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.01796		
1gefA	123	0.05080	c.52.1.18	60465
1ob8A	135	0.06573	c.52.1.18	111627
1hh1A	143	0.2782	c.52.1.18	61036
1y88A	199	0.7751	a.60.4.3,c.52.1.30	116560,116561
1u20A	212	2.400	d.113.1.1	119463
2inbA	140	3.851		
2pjuA	225	5.920		
1xmxA	385	6.166	c.52.1.26	115568
2q5cA	196	8.573		
1dcsA	311	19.06	b.82.2.1	28124
1hg7A	66	25.19	b.85.1.1	28280
1ucsA	64	25.28	b.85.1.1	88466
2okfA	140	26.61		
1y0kA	209	32.04	c.52.1.31	122485
2a2lA	145	37.86	d.110.9.1	126035
2aehA	369	42.68	a.11.2.1,b.55.1.5,d.15.1.4	126625,126626,126627
1ojrA	274	43.07	c.74.1.1	93147
2oaiA	94	47.24		
1tiiD	99	47.70	b.40.2.1	24965
2c8eE	211	48.11		
1qb5D	99	48.16	b.40.2.1	88357
2vhhA	405	50.67		
2oatA	439	51.72	c.67.1.4	34452
2p4pA	86	53.79		
2essA	248	55.02	d.38.1.8,d.38.1.8	132346,132347
1dynA	125	58.28	b.55.1.1	26955
2e52A	300	59.92		
1xk5A	204	61.65		
1sqwA	188	62.39	b.122.1.1,d.17.6.3	119033,119034
2po1B	277	62.39		
2irpA	208	65.91		
1zxiC	288	66.65	d.87.2.1,d.145.1.3	125776,125777
1wdjA	187	68.10	c.52.1.27	114536
1ryaA	160	69.61	d.113.1.5	105122
2p13A	90	71.05		
1ofzA	312	72.30	b.68.8.1	86978
1z7bA	358	74.42	c.2.1.2	124599
2q7sA	290	77.88		
2exuA	200	78.55		
1a62	130	78.77		
2jg6A	186	79.28		
1iwlA	182	79.67	b.125.1.1	83757
1wfwA	74	80.46	b.34.2.1	114595
2je6B	250	85.71		
1c30B	382	86.19	c.8.3.1,c.23.16.1	30736,31413
2jc5A	259	87.74		
1t0fA	276	89.14	a.4.5.27,c.52.1.16	112195,112196