# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.1625		
1gefA	123	0.2960	c.52.1.18	60465
1ob8A	135	0.6252	c.52.1.18	111627
1hh1A	143	1.992	c.52.1.18	61036
1u20A	212	5.087	d.113.1.1	119463
1y88A	199	7.252	a.60.4.3,c.52.1.30	116560,116561
1xmxA	385	11.97	c.52.1.26	115568
2arcA	164	27.58	b.82.4.1	28148
2inbA	140	30.57		
2je6B	250	32.55		
2pjuA	225	37.05		
1ofzA	312	40.13	b.68.8.1	86978
1ucsA	64	51.84	b.85.1.1	88466
1hg7A	66	56.14	b.85.1.1	28280
2exuA	200	58.22		
1ojrA	274	59.25	c.74.1.1	93147
3b4tA	262	63.98		
1r6lA	239	64.94	d.14.1.4,d.101.1.1	97153,97154
2a7mA	250	68.57		
1mskA	331	68.75	d.173.1.1	42495
2q49A	359	69.66	c.2.1.3,d.81.1.1	139831,139832
2q5cA	196	75.54		
1dynA	125	77.85	b.55.1.1	26955
1ecfA	504	83.96	c.61.1.1,d.153.1.1	34053,41820
1e1aA	314	87.19	b.68.6.1	59155