# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.3025		
1gefA	123	0.4922	c.52.1.18	60465
1ob8A	135	0.9799	c.52.1.18	111627
1hh1A	143	2.998	c.52.1.18	61036
1u20A	212	4.635	d.113.1.1	119463
1xmxA	385	20.98	c.52.1.26	115568
1y88A	199	21.11	a.60.4.3,c.52.1.30	116560,116561
2arcA	164	23.81	b.82.4.1	28148
2inbA	140	38.79		
2je6B	250	39.28		
1hg7A	66	49.64	b.85.1.1	28280
1ucsA	64	50.51	b.85.1.1	88466
2pjuA	225	52.41		
2exuA	200	70.93		
1r6lA	239	75.87	d.14.1.4,d.101.1.1	97153,97154
3b4tA	262	77.45		
2q49A	359	86.22	c.2.1.3,d.81.1.1	139831,139832
1ecfA	504	88.40	c.61.1.1,d.153.1.1	34053,41820