# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1gefA	123	0.01998	c.52.1.18	60465
2eo0A	147	0.05432		
1ob8A	135	0.2003	c.52.1.18	111627
1hh1A	143	1.633	c.52.1.18	61036
1y88A	199	1.730	a.60.4.3,c.52.1.30	116560,116561
1u20A	212	2.702	d.113.1.1	119463
2inbA	140	2.937		
1xmxA	385	3.464	c.52.1.26	115568
1dcsA	311	5.161	b.82.2.1	28124
2okfA	140	5.689		
1o20A	427	8.911	c.82.1.1	86556
2jc5A	259	8.966		
1ofzA	312	9.588	b.68.8.1	86978
2pjuA	225	9.948		
1s9jA	341	12.61	d.144.1.7	112049
1dcs	311	14.66		
1ecfA	504	16.09	c.61.1.1,d.153.1.1	34053,41820
2gxaA	274	19.61		
2arcA	164	23.29	b.82.4.1	28148
1rdqE	350	25.61	d.144.1.7	97314
1mq4A	272	25.81	d.144.1.7	91391
2q5cA	196	28.47		
1tkiA	321	30.87	d.144.1.7	41638
1h1wA	289	32.32	d.144.1.7	83460
2po1B	277	33.42		
1apmE	350	34.33	d.144.1.7	41628
1o6lA	337	37.48	d.144.1.7	81092
1xwsA	313	42.16	d.144.1.7	116133
1gp6A	356	47.70	b.82.2.1	65441
2a40B	260	48.66	d.151.1.1	126139
1pztA	286	49.53	c.68.1.2	95470
1ojrA	274	51.42	c.74.1.1	93147
1uu3A	310	51.61	d.144.1.7	99999
2jc4A	256	51.65		
3c4zA	543	57.10		
2qhqA	125	59.06		
1ryaA	160	62.76	d.113.1.5	105122
1vzoA	355	62.94	d.144.1.7	108971
1xh9A	350	67.23		
2q49A	359	67.57	c.2.1.3,d.81.1.1	139831,139832
2bikB	313	67.76		
1zrzA	364	68.62		
3b4tA	262	68.97		
2ogyA	262	71.53		
2hyxA	352	71.54		
1mskA	331	75.39	d.173.1.1	42495
2h5gA	463	76.96		
2v0hA	456	77.26		
1jj2S	119	82.64	b.34.5.1	63104
2o2xA	218	84.74		
1dynA	125	87.23	b.55.1.1	26955
2je6B	250	88.28		
2bs3A	656	88.54	a.7.3.1,c.3.1.4,d.168.1.1	129042,129043,129044
2p09A	78	89.15