# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1gefA	123	0.1801	c.52.1.18	60465
2eo0A	147	0.1856		
1ob8A	135	0.5037	c.52.1.18	111627
1hh1A	143	2.370	c.52.1.18	61036
1y88A	199	6.130	a.60.4.3,c.52.1.30	116560,116561
1u20A	212	6.536	d.113.1.1	119463
1xmxA	385	12.84	c.52.1.26	115568
2je6B	250	30.51		
2inbA	140	35.06		
2arcA	164	39.43	b.82.4.1	28148
1ucsA	64	41.86	b.85.1.1	88466
3b4tA	262	43.19		
1hg7A	66	44.76	b.85.1.1	28280
1ojrA	274	45.36	c.74.1.1	93147
1e1aA	314	51.35	b.68.6.1	59155
1r6lA	239	52.24	d.14.1.4,d.101.1.1	97153,97154
1ofzA	312	52.37	b.68.8.1	86978
1mskA	331	57.25	d.173.1.1	42495
2a40B	260	63.65	d.151.1.1	126139
2a7mA	250	67.28		
2pjuA	225	74.12		
2q49A	359	75.73	c.2.1.3,d.81.1.1	139831,139832
2okfA	140	81.40		
1dcsA	311	81.63	b.82.2.1	28124
2jc5A	259	82.75		
1cxqA	162	83.00	c.55.3.2	33621
1sqwA	188	85.79	b.122.1.1,d.17.6.3	119033,119034