# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gefA 123 0.01295 c.52.1.18 60465 2eo0A 147 0.1736 1ob8A 135 0.4241 c.52.1.18 111627 2a40B 260 2.510 d.151.1.1 126139 2imqX 282 4.047 1orvA 728 4.694 b.70.3.1,c.69.1.24 87354,87355 1wyuA 438 4.707 c.67.1.7 121452 1u20A 212 5.344 d.113.1.1 119463 1y88A 199 5.514 a.60.4.3,c.52.1.30 116560,116561 2uwiA 142 5.638 2je6B 250 6.228 2d80A 318 6.271 2e52A 300 8.541 1vsgA 364 9.575 h.4.1.1 45782 1zxiC 288 10.86 d.87.2.1,d.145.1.3 125776,125777 2exuA 200 10.89 1ojrA 274 11.01 c.74.1.1 93147 1n62C 288 11.05 d.87.2.1,d.145.1.3 80094,80095 1r89A 437 12.77 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2ob3A 330 14.43 1hh1A 143 14.66 c.52.1.18 61036 2po1B 277 14.99 2q49A 359 15.36 c.2.1.3,d.81.1.1 139831,139832 1h1nA 305 17.77 c.1.8.3 70855 1zv9A 172 18.94 b.2.2.2 125700 2fbeA 201 19.23 b.29.1.22 133241 1sqgA 429 19.49 a.79.1.3,c.66.1.38 105912,105913 3c96A 415 22.69 2je6A 277 22.85 2arcA 164 23.19 b.82.4.1 28148 2inbA 140 23.25 1a8dA 452 24.00 b.29.1.6,b.42.4.2 24262,25607 1qh4A 380 24.83 a.83.1.1,d.128.1.2 18462,41197 1pztA 286 25.88 c.68.1.2 95470 2cx4A 164 27.70 c.47.1.10 130973 1ct9A 553 28.35 c.26.2.1,d.153.1.1 31616,41834 1mskA 331 29.01 d.173.1.1 42495 2uwgA 171 30.64 2fbdA 122 30.66 1ppjD 241 31.17 a.3.1.3,f.23.11.1 104258,104259 2c92A 160 32.10 2qt3A 403 32.84 2gf3A 389 32.91 c.3.1.2,d.16.1.3 135070,135071 1bgpA 309 33.85 a.93.1.1 18690 1r6lA 239 34.00 d.14.1.4,d.101.1.1 97153,97154 2i5nH 258 35.90 b.41.1.1,f.23.10.1 137064,137065 1h4pA 408 36.08 c.1.8.3 90617 1dzfA 215 36.89 c.52.3.1,d.78.1.1 33344,39753 1sznA 417 37.69 b.71.1.1,c.1.8.1 106162,106163 1p2hA 571 37.75 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2gtqA 867 38.27 2o0jA 385 40.90 1sdwA 314 41.90 b.121.1.2,b.121.1.2 98810,98811 2aqmA 154 42.15 2jc5A 259 43.04 1to3A 304 44.54 c.1.10.1 107161 2essA 248 44.64 d.38.1.8,d.38.1.8 132346,132347 2nn6B 249 45.04 2rjoA 332 45.82 2ex0A 399 45.83 c.87.1.9 132494 2zctA 249 46.16 3bvrA 383 46.83 2qe8A 343 47.18 1pl8A 356 47.32 b.35.1.2,c.2.1.1 94878,94879 2dkaA 544 48.16 1wkbA 810 53.92 1orrA 347 54.76 c.2.1.2 93460 2pjuA 225 55.17 1qwiA 143 55.43 d.227.1.1 96474 1ucsA 64 56.00 b.85.1.1 88466 1x84A 189 56.14 d.113.1.2 121795 2blnA 305 56.70 b.46.1.1,c.65.1.1 128734,128735 1r6fA 310 56.84 e.46.1.1 97149 1u6rA 380 56.88 a.83.1.1,d.128.1.2 119600,119601 3bkhA 268 57.34 1sqjA 789 57.37 b.69.13.1,b.69.13.1 105918,105919 2v9lA 274 57.71 1dynA 125 57.86 b.55.1.1 26955 2okfA 140 61.38 1e1aA 314 61.66 b.68.6.1 59155 1yroB 286 61.72 c.68.1.2 123932 2ze0A 555 63.81 1j31A 262 65.08 d.160.1.2 90808 1yvkA 163 65.09 d.108.1.1 124101 1g9mG 321 65.29 d.172.1.1 42492 1s1mA 545 65.87 c.23.16.1,c.37.1.10 105201,105202 1hg7A 66 65.88 b.85.1.1 28280 1fgkA 310 67.30 d.144.1.7 41693 2a6hA 315 67.47 d.74.3.1,d.181.1.1 126260,126261 1ecfA 504 67.91 c.61.1.1,d.153.1.1 34053,41820 1k2fA 190 69.65 b.8.1.2 68054 1kssA 571 69.93 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1m15A 357 69.93 a.83.1.1,d.128.1.2 78368,78369 2gduA 504 70.35 b.71.1.1,c.1.8.1 135032,135033 2uxyA 341 70.68 1l9cA 389 70.97 c.3.1.2,d.16.1.3 77815,77816 1rkbA 173 71.46 c.37.1.1 111854 1v9fA 325 77.24 d.265.1.3 108448 1ezvD 245 78.02 a.3.1.3,f.23.11.1 59546,59547 2i52A 121 80.50 d.316.1.1 137055 3lzt 129 80.83 1jj2S 119 81.20 b.34.5.1 63104 1mkiA 330 82.46 e.3.1.2 84994 1gyvA 120 84.20 b.1.10.2 70790 1pvvA 315 84.27 c.78.1.1,c.78.1.1 95190,95191 2irpA 208 85.59 2dkfA 431 86.39 1g0dA 695 86.40 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 1b9oA 123 86.63 d.2.1.2 36597 2o5fA 171 87.76