# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1gefA	123	0.2085	c.52.1.18	60465
2eo0A	147	0.2675		
1ob8A	135	0.5523	c.52.1.18	111627
1hh1A	143	2.342	c.52.1.18	61036
1u20A	212	7.650	d.113.1.1	119463
1y88A	199	8.490	a.60.4.3,c.52.1.30	116560,116561
1xmxA	385	15.81	c.52.1.26	115568
2je6B	250	28.70		
3b4tA	262	31.73		
2inbA	140	34.38		
2arcA	164	35.20	b.82.4.1	28148
1ucsA	64	37.23	b.85.1.1	88466
1hg7A	66	37.92	b.85.1.1	28280
1r6lA	239	40.08	d.14.1.4,d.101.1.1	97153,97154
2a40B	260	45.62	d.151.1.1	126139
2pjuA	225	53.06		
1mskA	331	55.95	d.173.1.1	42495
1e1aA	314	59.84	b.68.6.1	59155
1dcsA	311	68.39	b.82.2.1	28124
1dynA	125	70.78	b.55.1.1	26955
1ofzA	312	71.72	b.68.8.1	86978
2nn6B	249	74.73		
1ojrA	274	75.32	c.74.1.1	93147
2q5cA	196	75.64		
2jc5A	259	78.86