# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1gefA	123	0.3907	c.52.1.18	60465
2eo0A	147	0.4832		
1ob8A	135	0.8662	c.52.1.18	111627
1hh1A	143	3.798	c.52.1.18	61036
1u20A	212	5.526	d.113.1.1	119463
1xmxA	385	12.01	c.52.1.26	115568
2jg6A	186	29.03		
1mskA	331	30.52	d.173.1.1	42495
2q5cA	196	37.74		
1dynA	125	38.26	b.55.1.1	26955
2inbA	140	40.72		
2a40B	260	41.71	d.151.1.1	126139
2arcA	164	46.59	b.82.4.1	28148
2je6B	250	48.46		
2pjuA	225	49.47		
2q49A	359	53.45	c.2.1.3,d.81.1.1	139831,139832
1hg7A	66	55.86	b.85.1.1	28280
1ucsA	64	57.45	b.85.1.1	88466
1ecfA	504	61.22	c.61.1.1,d.153.1.1	34053,41820
1y88A	199	66.90	a.60.4.3,c.52.1.30	116560,116561
1pztA	286	73.51	c.68.1.2	95470
1tyjA	170	75.02	b.2.2.2	119390
2nn6B	249	76.74		
1dcsA	311	77.70	b.82.2.1	28124
3b4tA	262	80.33		
2bm3A	166	80.53	b.2.2.2	128762
2exuA	200	84.25		
2fbdA	122	84.75		
1y0kA	209	88.69	c.52.1.31	122485