# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	0.2318		
1gefA	123	0.3650	c.52.1.18	60465
1ob8A	135	0.7842	c.52.1.18	111627
1hh1A	143	2.167	c.52.1.18	61036
1u20A	212	6.993	d.113.1.1	119463
1xmxA	385	9.103	c.52.1.26	115568
1y88A	199	18.57	a.60.4.3,c.52.1.30	116560,116561
2inbA	140	25.82		
1hg7A	66	33.18	b.85.1.1	28280
2q5cA	196	34.44		
2pjuA	225	36.08		
1ucsA	64	37.01	b.85.1.1	88466
2je6B	250	52.43		
2nn6B	249	54.68		
1e1aA	314	56.14	b.68.6.1	59155
1ecfA	504	57.31	c.61.1.1,d.153.1.1	34053,41820
2jg6A	186	59.84		
1dcsA	311	65.22	b.82.2.1	28124
2arcA	164	72.82	b.82.4.1	28148
3b4tA	262	77.39		
1mskA	331	77.45	d.173.1.1	42495
2a40B	260	79.77	d.151.1.1	126139
1y0kA	209	88.83	c.52.1.31	122485