# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1gefA	123	0.2776	c.52.1.18	60465
2eo0A	147	0.2851		
1ob8A	135	0.5821	c.52.1.18	111627
1hh1A	143	3.125	c.52.1.18	61036
1u20A	212	9.094	d.113.1.1	119463
1xmxA	385	11.34	c.52.1.26	115568
2inbA	140	30.83		
2pjuA	225	32.19		
2arcA	164	35.47	b.82.4.1	28148
1ucsA	64	36.78	b.85.1.1	88466
1hg7A	66	37.62	b.85.1.1	28280
2je6B	250	47.43		
1y88A	199	48.91	a.60.4.3,c.52.1.30	116560,116561
2a40B	260	53.49	d.151.1.1	126139
1mskA	331	57.25	d.173.1.1	42495
2jc5A	259	68.05		
2q5cA	196	70.58		
2jg6A	186	72.12		
1sqwA	188	76.15	b.122.1.1,d.17.6.3	119033,119034
1ofzA	312	76.86	b.68.8.1	86978
3b4tA	262	81.77		
1e1aA	314	82.18	b.68.6.1	59155