# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tkiA	321	8.796	d.144.1.7	41638
1xmxA	385	11.78	c.52.1.26	115568
1gefA	123	16.69	c.52.1.18	60465
1jksA	294	17.14	d.144.1.7	71710
1xwsA	313	17.27	d.144.1.7	116133
2inbA	140	20.99		
1h1wA	289	21.76	d.144.1.7	83460
2bikB	313	22.14		
1u20A	212	22.77	d.113.1.1	119463
2arcA	164	23.66	b.82.4.1	28148
2eo0A	147	24.36		
2okfA	140	28.44		
1hv9A	456	28.77	b.81.1.4,c.68.1.5	28060,34518
2jc5A	259	30.85		
1uu3A	310	34.99	d.144.1.7	99999
2c30A	321	35.63		
1yhvA	297	38.32		
1ofzA	312	38.96	b.68.8.1	86978
1o6lA	337	43.16	d.144.1.7	81092
1rdqE	350	45.26	d.144.1.7	97314
1pztA	286	45.41	c.68.1.2	95470
1dcsA	311	45.47	b.82.2.1	28124
2bvaA	292	46.30		
1ob8A	135	48.73	c.52.1.18	111627
2q5cA	196	48.75		
3c4zA	543	50.95		
1xh9A	350	51.68		
2bfxA	284	55.24		
1mq4A	272	56.60	d.144.1.7	91391
1csn	298	69.26		
1y88A	199	72.10	a.60.4.3,c.52.1.30	116560,116561
1apmE	350	72.24	d.144.1.7	41628
1vzoA	355	73.69	d.144.1.7	108971
1o20A	427	77.59	c.82.1.1	86556
1dcs	311	85.67