# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eo0A	147	2.911		
1gefA	123	3.005	c.52.1.18	60465
1xmxA	385	3.338	c.52.1.26	115568
1ob8A	135	5.497	c.52.1.18	111627
2jc5A	259	12.44		
1u20A	212	16.07	d.113.1.1	119463
1shwB	181	16.18	b.18.1.4	105563
1nukA	183	16.78	b.18.1.4	23721
1ofzA	312	18.81	b.68.8.1	86978
1dcsA	311	21.00	b.82.2.1	28124
1kgyA	181	24.34	b.18.1.4	72449
1y88A	199	27.72	a.60.4.3,c.52.1.30	116560,116561
2bbaA	185	28.32		
2jc4A	256	31.20		
2inbA	140	34.79		
2okfA	140	38.90		
1pvtA	238	42.61	c.74.1.1	95189
2h88A	621	61.08		
3c8xA	206	62.15		
1ojrA	274	64.73	c.74.1.1	93147
1u2bA	138	65.61	b.55.1.1	119474
1f75A	249	65.69	c.101.1.1	59662
1yd6A	99	66.63		
2arcA	164	68.42	b.82.4.1	28148
1f89A	291	68.79	d.160.1.1	64988
1fkqA	124	71.42	d.2.1.2	36601
1hh1A	143	73.88	c.52.1.18	61036
1o20A	427	75.43	c.82.1.1	86556
1mkiA	330	77.71	e.3.1.2	84994
1kssA	571	78.99	a.138.1.3,c.3.1.4,d.168.1.1	72928,72929,72930
1d02A	202	80.25	c.52.1.8	33313
1b9oA	123	80.49	d.2.1.2	36597
2bs3A	656	86.34	a.7.3.1,c.3.1.4,d.168.1.1	129042,129043,129044